RadishBase

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Information for unigene UN08387

FASTA Sequence

Unigene ID: UN08387	Length: 1340	SSR
CAGCGAAAACATGAGAGGGATGTCTGATGTGAATCACTCTGGGGGATAAAAAGTAAAATTATAATACACCCACGGGGGTAAAATAA CACAGTTAATTACCTTAAAAGAATTTTAGAAAACCTCTTTATATTAATGCAAAACCTCACCTCTTGTCTCTCTGTCTCTGAAACAG TCAACCTCATATTCATTCCTCTCTCTCTTGCTTCCATGGACGAAACCAATGGAAAAAGAGAAACTCACGATTTCATGAATGTTAAC GTCGAATCCTTCTCTCAGCTTCCTTTTATCAGCCGTACTCCTCCCAAAGAAAAAAGCTCCATCGTTCGTCTCTTCGGCCAAGAGCT CGTCAGAGACAAGTCTTCCGGTGCTCAACAAGAAGACTTCTGTGAGACCACAACGATCAAGATCAACGAAGAGAGCTCTGAGAATG TCAAGGAGAAGGACAAAGACAAGGAGAAAGACAACAGCAACAACAACAGGAGATTCGAGTGTCACTACTGTTTCAGAAACTTCCCT ACTTCTCAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGAACGCCAACACGCCAAACGCGGTTCTATGCCATCATACCTTCA TCAGTCTGACTCTCACCACGTCTACGGCTTCCTAAACAACCACCACCACCACCGTCACTATCCCACGTGGACGACGGAAGCTAGAT TCTACGGTGGTGGAGTAGGAGGACAACAAACGCCGTCGTATTACTCACGCACTCTTCTTCCCCCTCCTTCTTCTAACCCACCGACG ATCAACGGAAGTCCTTTGGGTGTGTGGCGTGTACCACCGCCTTCCACGTCAGCAAACGCTATTCATGGCGTTTACTCAGCTTCACC AGCTTCAGCGTTTAGAACGCACGAGCAGGAGCGTAAAGAGCCGAACTGGCCGTACAGATTGATGAAACCTAATGTGAAAGATCATG TGAGTCTCGATCTTCATCTTTGACACTTTGTTTTGGTATGCATCATTTTAATTTAGCCGTGATGAGACTTGTTCGGACGGTAAAGC CTATTCTTCTGAGGGTCTTGGAGAAAAAAGAAAAAGAAAACAAAACCAAGGAGAACCAGCATAATGTGTAGATCTTGAAACTTTGA GGGTTTTTTTCAGGTTTGAGTTTATATTGTTATAGAATTATTAAGGGAATAATATTTGATTTAACAGTAAAATATGTTCATGCATT TTTTTCTGAACCAGTGTTTAATAAAGCATTATACGCTAAACAGACGGTGATACAATGTCTAATATAATCGTTTACAAATTATATAA TGTACTGAATATAACAGTAATATATTGGAGAACACTGGTCTTAATGATAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181725 zinc finger protein 8 [Arabidopsis thaliana]	1047	1e-111
XP_002879961 hypothetical protein ARALYDRAFT_903538 [Arabidopsis lyrata subsp. lyrata]	1034	5e-110
AAA87304 zinc finger protein [Arabidopsis thaliana]	740	6e-076
CAN68511 hypothetical protein VITISV_043839 [Vitis vinifera]	409	1e-037
CAB67635 zinc finger-like protein [Arabidopsis thaliana]	400	2e-036

Swiss-Prot top hits (Blast detail)	Score	e value
Q39262 Zinc finger protein 3	148	1e-008
Q39265 Zinc finger protein 6	147	1e-008
Q39263 Zinc finger protein 4	145	2e-008
Q39266 Zinc finger protein 7	138	2e-007
Q42485 Zinc finger protein 1	136	3e-007

TrEMBL top hits (Blast detail)	Score	e value
P93751 At2g41940/T6D20.16	1047	1e-111
Q39267 Zinc finger protein (Fragment)	740	4e-076
A5C0T6 Putative uncharacterized protein	409	1e-037
Q9M2P1 Zinc finger-like protein	400	1e-036
Q84WI0 At3g58070	397	2e-036

Arabidopsis top hits (Blast detail)	Score	e value
AT2G41940.1 ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding / transcription factor/ zinc ion binding	1048	4e-114
AT3G58070.1 GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding	398	1e-038
AT5G06650.1 GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding	204	3e-016
AT5G25160.1 ZFP3 (ZINC FINGER PROTEIN 3); nucleic acid binding / transcription factor/ zinc ion binding	148	1e-009
AT1G67030.1 ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding	147	1e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			13%


8	4			25%


12	4			25%


9	6			38%

Unigene Members	Member information