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Information for unigene UN08398
| FASTA Sequence |
| Unigene ID: UN08398 | Length: 1572 |
| SNP | ATCTTAAGTTTTTGGATTTTTTTAAAGCCACTGATCATTCGATAAAACGAAACATAAATAAGAAACTGATATTTTTAAGGGGTAGA
CATTAAGCTTAAACATTTAGCTTCTCAATCTCTCTCCTTAGAGCATTAGCTCTAAACACACTCCCAATGGTGTTCACAGCCAACTT
CAAATCCTCCAAAGGACTACCCGGTGCGACCCTCTTGTACAGATAGCTATCAAACGTCATCTTCTGAACGTACTCATCTCCACACA
TCTCCACAAACGCTTCTCTAGCCGGATTGGATCTGTAAAACACTTTCTGCAACACATCAAGCACCCTGTACGTAGGCAAGTACGTC
TTGTCCCATTTCTCCAAGTACTTCCTCAAATCACTTTCATCAATCATCTTCTTACCGTTCTGTGAACCTTCAACGATGGCTTCAGC
ACACATCCTTCCACTCTTTGCAGCGAAGTAGATCCCTTCGCCGGAGCATTTAGTCACGTACCCTGCAGCATCACCAACAAGAGCCA
CACGCTTGGAGAGCCTGCGCGGTCTCGGGTGTTCAGGAATAGGGTGAGCCTCCACGCGGATGATCTTGCCTCCTAGAATCTTGTCC
TTGGCTCTGTTTCTTGTCGCGAGCTGGAACTTCTTGATGTCACCTTTGTGCGTAACAGTGCCTGTCCCGACAGCCACGTGGTCGCA
TTTAGGGAACACCCATCCGTAAAAGTCCGGCGACACGTCATCACCGACGTACATCTCAGCTAGATCCTCGTAGTACGTCATCTTAT
CATCTGGGATTCTGATTCTCTCCTGAAAAGCGATGGCATAGTCGTAATCTCCAGCACCGATAGACTTGGCAACTCTAGAGTTAGCT
CCGTCAGCTCCGATAACGGCGTCAACCTCCATCGTCTTCTTCTGTCCCGTAGCTCCCGTCTTCCCATCATACTCCGTGTAATGCAA
CACGTACGGCGAGTCCCACTCCTCGGGAAGATCCATCTTGAGAAAGAGACCGTTGATAACAGTAGCTCCACTCTTCTCCGCTCTCT
CCCTCAGGTACTGGTCAAGAACCTCCCTCCTCACCATCCCTATGTACTCGTGCTCCTTGAGCGTGCGGCCGATGTCGACGGCGATG
TTGGACGGAGAGATCATCTTCATCTTCGTCACCCTCCTGTCGATGATGTCCAGCGGCAGGTTGAACTCTCCGACCATGCAGAGAGG
GATCGCGCCGCCGCAGGGCTTGCAGTTGTCCATCTTCCGCTCGATGAGGATCGTCTCGACGCCTCCCTGGGCGAGAGTCTCGGCGG
CGGCTCCTCCCGCCGGGCCTCCGCCGATGACGGCGACGCGGAGGGTGCGGTTGGCGAGCTTGGGGCTGGCTCTTGACGCGGTTACT
CTGAGGGAGGTCCGTCGATGGGGGAGAGAGAGTGAGGATGGAACATGGGAGACGAGAGTTATCTGGTCCGTTGGGGACTGGCGAAG
TCCGGTGAAGGATTTGAGTGCAAACGACGACATTGTTGTTGTACTACAGTGAAGAACACTGAACAGGAGATGGAGTGTGTGTTGTG
CTGTGTCTTCTCTCTCCTCAAGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABI63587 geranylgeranyl reductase [Brassica rapa subsp. pekinensis] | 2365 | 3e-264 |
| CAA74372 geranylgeranyl reductase [Arabidopsis thaliana] | 2282 | 1e-254 |
| NP_177587 geranylgeranyl diphosphate reductase [Arabidopsis thaliana] | 2274 | 1e-253 |
| XP_002887543 hypothetical protein ARALYDRAFT_476582 [Arabidopsis lyrata subsp. lyrata] | 2273 | 1e-253 |
| AAN31803 putative geranylgeranyl reductase [Arabidopsis thaliana] | 2269 | 4e-253 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9CA67 Geranylgeranyl diphosphate reductase, chloroplastic | 2274 | 4e-255 |
| Q9ZS34 Geranylgeranyl diphosphate reductase, chloroplastic | 1975 | 2e-220 |
| Q6Z2T6 Geranylgeranyl diphosphate reductase, chloroplastic | 1764 | 6e-196 |
| Q55087 Geranylgeranyl diphosphate reductase | 1420 | 4e-156 |
| P26172 Geranylgeranyl diphosphate reductase | 368 | 4e-034 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q09JZ1 Geranylgeranyl reductase | 2365 | 2e-264 |
| A9PH25 Predicted protein | 2034 | 4e-226 |
| B7X936 Geranylgeranyl reductase | 2023 | 8e-225 |
| B9RLY0 Geranylgeranyl hydrogenase, putative | 2022 | 1e-224 |
| C8CLK4 Geranyl geranyl reductase | 2002 | 2e-222 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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