RadishBase

| | | |

Information for unigene UN08403

FASTA Sequence

Unigene ID: UN08403	Length: 730		SNP
TTAAACGATATTACTGAATATTAAGTGAAGGAGCAGAAAGAACGTCATGAATACAGAGAAACAAAATATTGAGATTGGTATGTTAT TTGGACACCACACAGAGTCTACGAGAGAGAGGTTCACAAGCCTCAAAGGAGCATTTTTATTTGGACAACACACAAAAGTCTACGAG ACAGAGAGAGGAGGTTCACAAAAGAGGCAAACATATTTTCACAGGAGAACTTAACTAGCAGAAACCGTGGAAAACAATGTGATCTT GAATTTGAAGCTGATGCAGGCCAGTCGCCCGCCATCCTTGTCGTTTATCGTCATCTTGAGCGTATAAGTACCGGGGGGTGTAATAG AAGGCAGTGTTTGGGAATGAGAAAGGACAAAGCTGCCAGGTGCGATCGGGCAGGAAGACTCATCGCAGAGATCATGTGTTTCGGTA TGGATATGAACTCCAAATAATGAAACACTGATCACTACTTTTCCTCCAGAGATGTCTTCATCAGTAGAACCAGTGATCTTAAATGT AGCGGCTTCGCCACTCACAACAGGGTCAGGAGAGATCTCCACACCCTTGACCTTAACGGGATCGAGCCTCTTATCGCAGTTGTGGA AAGAAGTGGCGCGCAAAGAAGGCAAGAGGAAGAGCGAGAAGAGGAGAAGAAGCAGAGGCTGAGCTTGAGAAATCGCCATGGATGAG TTCGGATTTGATTTGATGAAGCTTTAGCCGATTTTAATCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002877317 hypothetical protein ARALYDRAFT_905501 [Arabidopsis lyrata subsp. lyrata]	651	4e-066
NP_189996 MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]	633	5e-064
CAN64691 hypothetical protein VITISV_030670 [Vitis vinifera]	415	1e-038
XP_002270174 PREDICTED: hypothetical protein [Vitis vinifera]	413	2e-038
XP_002524079 Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis]	413	2e-038

Swiss-Prot top hits (Blast detail)	Score	e value
Q54SZ9 Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107	191	5e-014
Q54YD2 Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295	178	1e-012
Q6CHU5 Phosphatidylglycerol/phosphatidylinositol transfer protein	127	1e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9LXQ2 At3g44100	633	4e-064
A5ALT4 Putative uncharacterized protein	415	7e-039
B9SDL0 Phosphatidylglycerol/phosphatidylinositol transfer protein, putative	413	1e-038
A5AFH3 Putative uncharacterized protein	392	3e-036
C6SXR8 Putative uncharacterized protein	384	3e-035

Arabidopsis top hits (Blast detail)	Score	e value
AT3G44100.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	634	2e-066
AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	373	3e-036
AT5G06480.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	352	9e-034
AT2G16005.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	236	3e-020
AT5G23820.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	113	5e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	6			46%


10	3			23%


11	4			31%

Unigene Members	Member information