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Information for unigene UN08458
| FASTA Sequence |
| Unigene ID: UN08458 | Length: 1291 |
SSR | | GGAGAAACAAACATAAAATGCATTCAAATGGTTCATTCACATGATTCATCCAAATGGAGAAACAAACATGACCAAAAATTTGAATG
GATCATTTAGATGGATCACACAAATGGAACAGCTGAATGGAGATTAGAAATAGAAAAACAAACAGGGCCTAAGAATCTGAAATCAA
TTAAGATTCACCACTCAGAAGGATATGAGATAAAAGTGATGAACTAAGCAAGGGAGAAAATAGCATACATGAGGAAATGTCTCACA
CAACAGCTTATTCACATGAGATGTTGTCTTCTCTAACCATTCCTTTGTACGTTCAACACGAAAGGAGTCACCACTCAGTTTCTGAC
TGGATTTTTCGTGTACATTGTTGGTTTTAACAATCTCTCGGCTTATAGTTTCTGTCAGGCCGTCGCTCTGTCCTTGAGATTTCACT
GTCATAGAACGAAGCTCGTCCAAAACTGAGTGTGTGTGTGTGTGACTTACACCAGCTTCAATGAAGTTATCATTCTTAATCCCAAT
CATCTGAGCAATCTGATGAGAGTAATCTTCAACCTCATCAAACATAGGAGACGCGGAACGGAAAGAGATCTGATCATCATCCATCA
TCATCATCCTCTTGTTGATGCTACCAGAGGTCAACACCTCATCAGCAGTGATCTTCACATTATGATACCATATCACATCTTTACCG
GTAGGCCACCTAAGAGGAACCTTGTAATCCACAGGAGGTGAGACCAAACACTCCTGTCTCGACCCACAGAACCGATCAAGACTCTC
AGAGAGATTAAAGCAAGGAACATAGTTCTCAGACTCTTCTATACTATTACAATACTCCAACTCTTTCCATTTACTAGGACCAGCAG
AGATCTCTCCAATATCCAACAAGTCTGAAACGAGCTGCTCCGGTAACCTCCTGTAGTTGTGAAACACGTGGCCTCTCGAGGAGGTG
GAGATGGAGACCGTCCACCAGAAGGAACCGGCTAGAGCGAGGATCACGATTAGGACCAAACTGATCTTGAGAGACAGAAGCATCAA
CCTGTGTCTGCTCCTTGCGTTGTAAGGTTCGGTTTTGGGAGGAGATTGAGTATTATTATTAAAGAGGAAAGCGGAAGGGAACCTCA
AGGTTAAGTGACTTTCCTTCTCTTTGTCTTTCATTTGGGAGTCTCTGAGATCGTCGCTGCTGTCGGAGACTCGTACTCCTCCTGAG
GTGCCACGTTGCAGTGGCATTGACATTTTTTTTAGATCCCTTGTTTGTTTTGTGTTTTGTGTTATTTACAAAACGATGATTCTTTC
C
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89659 dehydration-responsive protein-related [Brassica rapa] | 1145 | 6e-123 |
| XP_002513934 S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | 690 | 4e-070 |
| AAF71804 F3F9.21 [Arabidopsis thaliana] | 454 | 8e-043 |
| XP_002889181 hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] | 440 | 3e-041 |
| NP_177948 putative pectin methyltransferase QUA2 [Arabidopsis thaliana] | 429 | 6e-040 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C9Q8 Probable pectin methyltransferase QUA2 | 970 | 5e-104 |
| Q3EC77 Probable methyltransferase PMT5 | 381 | 1e-035 |
| Q8GYW9 Probable methyltransferase PMT4 | 377 | 3e-035 |
| Q9LZA4 Probable methyltransferase PMT7 | 153 | 3e-009 |
| Q84TJ0 Probable methyltransferase PMT6 | 150 | 6e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXV9 Dehydration-responsive protein-related | 1145 | 4e-123 |
| B9RJL5 S-adenosylmethionine-dependent methyltransferase, putative | 690 | 2e-070 |
| B9GUX3 Predicted protein (Fragment) | 385 | 6e-035 |
| B9H722 Predicted protein (Fragment) | 385 | 6e-035 |
| A5C385 Putative uncharacterized protein | 293 | 3e-024 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78240.1 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 970 | 4e-105 |
| AT1G78240.2 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 970 | 4e-105 |
| AT2G03480.1 dehydration-responsive protein-related | 381 | 9e-037 |
| AT2G03480.2 dehydration-responsive protein-related | 381 | 9e-037 |
| AT1G13860.4 dehydration-responsive protein-related | 377 | 3e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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