 |
Information for unigene UN08478
| FASTA Sequence |
| Unigene ID: UN08478 | Length: 1196 |
| SNP | CAGAAAGATCAATTTTGTATTTACATCAAACTAGTTTAACTAGATAGCTTCACAATTTGGTTACTATTGTAACTAATTTTTGCTAA
TTTTATATTACATGAGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCAATATTGCCCCACACAGCCAACT
TAAACACCAAACCAACACAGCAACCAAAATTAACAAAACACCCTTCCTCTCACGATCGTGGACGCAAGGCTTCAAAATTCAGCCCA
TGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGAACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCAC
ACGCTCACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGAACTGTGGAGACAGCTTGAGCGTTCGAAGCT
CCATAGCCTCTTTCTGAAGTCGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACAATCCACCTCCGTTTGC
TTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACCAGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGCTT
CTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAAAGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCG
ACGTTTCACCGCCGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTGATATCATCGTGGTGGTCGGAGATT
CCTTCTCTCTCACTCCTCTTCCCGCCGCTTATGGTGCTCGAGATCGTACTGTTGGGAGACGACACTCCTGCTTCCTCCTCGCAATC
CACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCAGGATCTGATGAAGAAGCGAATGTTTGGTTCCATGGAAATCTAGGGAGAT
TGTTGGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTTGTGAAAGTCCTAAGCTTAGGCTCAAACCCAGA
TCTTCTTTTCTCATCATCATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGAAGAAGAAAGATACAGATG
AGAAATGGTATTTTTCTTTTCCAAAGAGAGAGATCAGGTTTGTTGTGGCGAGTAGTAAGGAGAGAGATGATATGTGAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD64984 homeobox-leucine zipper protein, putative [Brassica oleracea] | 1323 | 1e-143 |
| XP_002863347 hypothetical protein ARALYDRAFT_494245 [Arabidopsis lyrata subsp. lyrata] | 1251 | 3e-135 |
| NP_199548 homeobox-leucine zipper protein HAT2 [Arabidopsis thaliana] | 1250 | 4e-135 |
| ABD65141 homeobox-leucine zipper protein hat1, putative [Brassica oleracea] | 970 | 1e-102 |
| AAA56901 homeobox protein [Arabidopsis thaliana] | 962 | 9e-102 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46601 Homeobox-leucine zipper protein HAT2 | 1250 | 2e-136 |
| P46600 Homeobox-leucine zipper protein HAT1 | 847 | 8e-090 |
| Q05466 Homeobox-leucine zipper protein HAT4 | 750 | 1e-078 |
| P46602 Homeobox-leucine zipper protein HAT3 | 600 | 4e-061 |
| P92953 Homeobox-leucine zipper protein ATHB-4 | 585 | 2e-059 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9S3 Homeobox-leucine zipper protein, putative | 1323 | 9e-144 |
| Q2A9A3 Homeobox-leucine zipper protein hat1, putative | 970 | 7e-103 |
| Q2A9C1 Homeobox-leucine zipper protein hat1, putative | 949 | 2e-100 |
| B9MUS1 Predicted protein | 832 | 7e-087 |
| B9GYL8 Predicted protein | 829 | 2e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47370.1 HAT2; DNA binding / transcription factor/ transcription repressor | 1251 | 1e-137 |
| AT4G17460.1 HAT1; DNA binding / transcription factor | 849 | 4e-091 |
| AT4G16780.1 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor | 751 | 1e-079 |
| AT3G60390.1 HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor | 600 | 3e-062 |
| AT2G44910.1 ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor | 585 | 2e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
