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Information for unigene UN08565
| FASTA Sequence |
| Unigene ID: UN08565 | Length: 2214 |
SSR | SNP | CCGGGCTCCTTTGGACAGCAGTACGGCGGATTGGGCCGTGGAACCGTCGGAATGTCGGAAGCGGGTTCGAATCCAAGTGTCCCCCC
GCAGGGTAGGATGATGCAAGGCACTTAGGGAATGATGGGGACGATTGGGTCAGGCTCTCAAATGCGGCCAAGTGGAATAATGCCTC
AGCACCAGCAGAGACCGGGTCAAGCCTCTCTAAGACCAGCTTCCTCTCCGAGTAGTCCATCTCCTGTTCCTCAAAACTTTCAAGCG
CATGGCCTTATGAGACCTTCATCTATTGGTTCTCCTGGTGTCCAATCTACTGGTGCAGCACAGCACAGCTTGCAAGCCACTAATCA
ACCATGGTTATCATCTTCTGCCCAAGGGAAGCCGCCTTTGGCACCTCCTTCTTATAGACCGCAAGTAAATAATAATCCCTCCTCCA
TGCAACAAAGATCGCACGTTACTCAGCAGCATCTTTCCACGTCACCAGCGACTTCACAGCCTCAGCAACAGCAACAACAACAACAA
CATCAGCTTCAGCCTCAAGAGCAACATCAACAATTGAGACCTCCGCATCAGACTTTACCTTACTCACATCAACCGGCCCGGGTCCA
AGGGTTGGTAAATCAGAAAGCTGCTTCTCCAGCAATGCCGAGCCCGCCCCCTGTGCCTCAACCAGGAAGCCAAGCTAAGCCAGTTT
CAGTAGAGAATGAGGAGTCTGATGATCGTATCCTGGGGAAAAGAAGCATCCATGAGCTACTTCAACAGATTGATCCGTCAGAGAAA
TTGGATCCAGAGGTTGAAGGCATCCTTGCTGATATTGCTGAAGACTTTGTGGAGTCAATCACAACTTTTGGATGTTCTTTAGCCAA
GCATAGAAAGTTTGATACTCTAGAGGCCAAAGACATCTTGCTCCATGTTGAAAGAAACTGGAATATCAGGCCTCCTGGTTTTAGCA
GTGACGAGATCAAGACATTTCGAAAGCCACTGGCAACAGATATTCACAAAGAGAGACTTGCCGCTGTAAAGAAGTCTGTGACGGTA
ACGGAAGCATCAAACGCCAGGAATCCGTTTGGGCATGGAACAGCTAATGCAAGAGGAGGAGGCCAGGCAAAGACGCCTGCTAATCC
CTTGGCCTCTACAACTTTTAATCACTGATTGTATTAGATTTAACCCTTCAGTCTTGTTTGATAGGAAATTTTCCATTTAAAAGGTT
AAGAACTTCTGTAAAAAGGTTCCAGCCTAGATTTTATATTCGAACCATAAGTAAAGTATCTTATCGGCTTATGGGATTGAACCGAG
TCTGATGTTTTTGCAAAGCACAACAAACATGTACTAATAGAAGAACAAGAGATGAGAAGTGGGTATGAATCCAGACTAGCCGGTAT
CATTAAACAGATTCTTCTGATACAGATGAAGCTTCCATAGCTCTGGATCCATTTCTCGCTTCTTATTAGTATCTTAGCCTTCAACG
ATCTTCACTGGCGTCCCGAAAGGACTCTGCTTGATTGATAAGAGCTCAATGTCAAGCTCGATTGTTGCGTTAGGAGGAATCTCTTG
CACTCCTTTCTTTCCGTAAGCAAGCTCCGGAGGAACAATCACCAGTCTCTGACCGCCTACATGCATCCCTTCAACGCCAAGGTCGA
GTCCTTTGAGAACATTCCCGTTCTCTGATTGTCCAATGTCAAACCCGTAAGGCGTTCCACCTCCAACGCCAAGTCCTTGTCGACTT
GTCATGAACGTTATCCCTTTCCATTTTGCAACATAGTGGACTGCGACCCGAGATCCTTTCACAGCCTCTGCTCCATTGCCAACTTT
TATATCATAGTACTTGAGACCATTGGGGAGAGTAGTAAACTCGCTGTCAGGTATCTTAGATGCACGTAGAGCTCTTCTACTGGTGC
TTACGGCCTCGGATGAATCAGTTAACAGAATCCCAGACGCAGCGGAGAGGAGACATCCAAGTAAAACTCTTCTTCCTTCGTAGCTC
ACCGGTGGCGCCGGAGAAACAACGGTCTCTGGTCTGATGATCTTTTCGCCGCCGGGAGACGGTAACGAGCACCGGTAAGATTTGGA
TTGCCTTCTTCTTGATTGAAAAGGAATGGAGGAAGAGAGAGAATGATGGAGAGGATGAAGAAGTTTCATTGGTAAGATCATTGTTG
TGTCTGATGAGTGAAAGAAGCTTGCTTCTTCTTCTTCTGAGTTTGAGCTTCAGTTGTGTTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884775 tata-associated factor II 58 [Arabidopsis lyrata subsp. lyrata] | 1561 | 7e-171 |
| NP_566367 transcription initiation factor TFIID subunit D10 [Arabidopsis thaliana] | 1525 | 1e-166 |
| NP_187617 FKBP-like peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana] | 1052 | 7e-112 |
| XP_002882651 hypothetical protein ARALYDRAFT_897182 [Arabidopsis lyrata subsp. lyrata] | 1045 | 5e-111 |
| XP_002277150 PREDICTED: hypothetical protein [Vitis vinifera] | 1010 | 6e-107 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q555L9 Transcription initiation factor TFIID subunit 12 | 327 | 4e-029 |
| O13722 Transcription initiation factor TFIID subunit 12 | 307 | 7e-027 |
| Q03761 Transcription initiation factor TFIID subunit 12 | 262 | 1e-021 |
| P49905 Transcription initiation factor TFIID subunit 12 | 224 | 3e-017 |
| P0C1B0 FK506-binding protein 4 | 171 | 4e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SR71 Putative TBP-associated 58 kDa subunit protein | 1525 | 7e-167 |
| Q9SR70 AT3g10060/T22K18_11 | 1052 | 5e-112 |
| B9HBK0 Predicted protein | 788 | 2e-081 |
| B9SRU6 Putative uncharacterized protein | 781 | 1e-080 |
| C6SWU7 Putative uncharacterized protein | 765 | 1e-078 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G10070.1 TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor | 1526 | 3e-169 |
| AT3G10060.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative | 1058 | 5e-115 |
| AT1G17440.1 EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor | 387 | 3e-037 |
| AT1G17440.2 EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor | 387 | 3e-037 |
| AT5G05420.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative | 191 | 2e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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