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Information for unigene UN08638

FASTA Sequence
Unigene ID: UN08638Length: 1386 SSR 
GCTGAAATCCATTTCTTCGGTGACAAAACCTATGAGGTAACTCAACTTTGACCTTTTGAGTAATTCTTGCATGATTCTCCACTGAG
CTTGATGTGTAAAAACATTGTGTTTAACTTCTTCAGGGAGGAAACGACTATGAAATCTATGAATCACCAAAAACAATAGGCCATTC
AGGTCAGTTTTGTTGGATATATAATCAGTTGAGTATCTATGTGTTTGTGTTGGTTTGAGAGTGTCGTGACAAGTCGGATTGTTTCT
TGTTGCGTTGTTGCAGTTACGAGTCCAGATGATACAATGGCAAAATGCAAGGCTCTGTTCATGTCTTGAAAGACCTATCCATCTCA
AGAACACAAGTGTCAGAGTTTGATTATTATTGGTGAATTTCTTACAACTTATGATTATTTACATCACAAAGAACCAGAGAGAAGTA
TGTTTGGGACACTGATTACCATATGTTTTGAATTTTGATTTCATAAAAAATAAATGTTTTTTTATAATCTTTTGTTTCATAAAAGA
ACTGGTTCTCATAGCTAAAGATCAAAGGATGTTAAGGGTTTGCTTTACAAGAATTTACAAAAAAATAGAAATACATATATATTTAA
TTAGAAAAGCTTATTAAACTTCAAACTTGAAAGTGATAAGATGAGTTAAGACTCAACCACAGGCTCAGGCTCTTCTCCTGCAGCAG
CTTCAGGGGCTGCTTCCTCTTCTCCTCCTCCTCCTCCTTCTCCCTCTGGAACCGAGGCGCTATCTTCAGGTTTATGATCTTCAGAA
GGCGGAGAAGGGGCACCAGAAGAGGCGGATCGACGGTGCTTAGCTGCAGCTTCATGAACGTTATTGTAACTTCCTTTCTCGAGAAA
GAGCTGGTTGAAATGGACCTTACAGTAGAGGACCCCGTTAAGAGAAGCGTAGGAAGAGTGAGTCAAAGGACAACCACTGTGTGCGC
ACTTGAAGCAAGTCTTGTGGTAACATTCTCCTTCCATGTTTACTTTCTCAAGTGGATAAACAGTTTTGTGACAAGTCGCACATTTG
TCTTGCGTTCCACTGAAGAATGAAGACAACTTGCTTGGAGCTCGAGTCATGTGATCATTCGGCTTCTCTGTCTTTCCTGTCTGAAA
ATTCTTGCTGAAATTGCCAGATTCTTTGAAAAGCTGCTCGAAGTGGGTCTTGCAGTAGAGAACTCCATCCATGGACGAGTAAGTAC
TCATCTGGAGAGTGCCATTGCAATGGCTGCATCTGAAGCATGATTTGTGATAAGTGTTTCCCTCTAACGTCAACAAATCCATCACG
TAAACGGTTTTGTCACATGCCTTGCATTTATCCAACGTTCCTGTAAACGCTGCCATTTTATATATCTTTTCTTATTCCAACGAGGA
CGAGAATTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_182104 GATA type zinc finger transcription factor-like protein [Arabidopsis thaliana]10481e-111
XP_002882034 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]10481e-111
XP_002878372 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]8535e-089
NP_191682 GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]8518e-089
CAB71053 LIM domain protein [Arabidopsis thaliana]8429e-088

Swiss-Prot top hits (Blast detail)Scoree value
P29675 Pollen-specific protein SF35073e-050
Q4U4S6 Xin actin-binding repeat-containing protein 22133e-016
Q9UHB6 LIM domain and actin-binding protein 12081e-015
Q9ERG0 LIM domain and actin-binding protein 12072e-015
Q4KM31 LIM domain-containing protein 21982e-014

TrEMBL top hits (Blast detail)Scoree value
O80839 Putative LIM-domain protein10488e-112
Q500W4 At3g612308516e-089
Q9M2E1 LIM domain protein8426e-088
Q2V2R7 Putative uncharacterized protein At2g45800.28292e-086
B9RDN9 Pollen-specific protein SF3, putative8193e-085

Arabidopsis top hits (Blast detail)Scoree value
AT2G45800.1 LIM domain-containing protein10557e-115
AT3G61230.1 LIM domain-containing protein8513e-091
AT2G45800.2 LIM domain-containing protein8362e-089
AT1G01780.1 LIM domain-containing protein7941e-084
AT2G39900.1 LIM domain-containing protein6641e-069

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  40%
 
71  20%
 
82  40%

Unigene MembersMember information