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Information for unigene UN08660
| FASTA Sequence |
| Unigene ID: UN08660 | Length: 1348 |
SSR | | TCTCCCTTCGACTTCTGAGAGTCATACAAACAAACCAACTCTTGTCCGAAATCATCCCTTCCGACCTTTTGATTCAGATTTCTTCC
ATGGATTCGTGTAGTCAATAAGGTCGAAAAACCCATCAAAGCGAAAACAGTTTCTCGTGGTCGATTCAGAATCCGAAAATGTCGAC
TTTGAACCCGTTTGATCTCTTGGGAGGTGACGCTGAGGATCCAAGCCAGATTGTTGTGTCTTTGCCGAAGAAGGTCGAGAAAGCAG
CTCCTGTGCAGCCTCCTGCTAAGGTTCATACCAAGCAGCCTCCTACTTCTCAAGCTGTGAGAGAGTCAAGGAATGCTCCTTCAGGA
GGTCGTGGTGGTGGTGGTGGTGGTGGGGGACGTGGACCTCCTCGTGGTTCATTTAACCCAGGAGGAGACAGACTTCATGATCCAAA
GGATGGAGAAAGGACTGGTGGATTCCGTGGATACCGCGAAAGTGGTGGTCGTGGAGGTCAACGTGGTGGATTTGCCAATGGTAGAG
CTGGTGATGTGGAAGGCCGCCCAAAGAGGGCCTTTGAGCGCCGTAGCGGGACAGGTCGTGGTAATGACCTGAAACGTGAGGGTGGT
GGTCGTGGAAACTGGGGTACCCCTGAAGATGATATTCCACCTCCAACGGAGGAAGCCACAACAGAGGTTGAGGAGAGCTCGGTTGC
TGAGAAGGAAGGCGGTGAGGACAACACCACCGATGCAAAGAATGAGGCTCCTGCTGATGAGGAAAAGGAGAAAGAACCTGAAGACA
AGGAAATGACATTGGAAGAGTATGAAAAAATTCTGGAGGAGAAGAAGAAAGCTCTGCAAGCCACAAAGGTTGAGGAAAGGAAAGTT
GATACCAAAGTGTTTGAGTCTATGCAGCAGCTCTCTAGCAAGAAGGCCAACAACGAGGAAATCTTCATCAAGCTGGGATCCGACAA
ACGCAAAGATGCTTCTGAGAAAGAAGAGAAGGCTAAGAAGTCTTTGAGCATTAACGAGTTTTTGAAGCCGGCTGCTGGAGAGAGAT
ACAACCCAAGAGGTGGTTACCGTGGAAGAGGAGGAGGCCGTGGACAGAGAGATGGAGGAGGCCGCAATGGTGGTCGTGGACAGAGA
GATGAAAAAGTGAACAGAGGAGCTCCTGCTCCGGCCATTGGAGACAGTGCTCAGTTCCCATCGTTGGGCAAATGAAGACCCCTCCT
TGGTCCTTCAGCATCTATCTATCTCTCTACTGTCTTAGTTTTAATTTTGTTCTTAATTCTATCATTTTTGTTACACTTTTTCTACA
GAACAAGTTTGAGTGCTTTTTAGTTATGGAAAAACAAATTATAAGCCCTCTGTTCCAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65038 nuclear RNA binding protein, putative [Brassica oleracea] | 1457 | 4e-159 |
| XP_002870099 hypothetical protein ARALYDRAFT_493124 [Arabidopsis lyrata subsp. lyrata] | 996 | 1e-105 |
| ABD65145 nuclear RNA binding protein, putative [Brassica oleracea] | 957 | 4e-101 |
| ABD65067 nuclear RNA binding protein, putative [Brassica oleracea] | 923 | 4e-097 |
| AAM64962 nuclear RNA binding protein A-like protein [Arabidopsis thaliana] | 755 | 1e-077 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8BH43 Wiskott-Aldrich syndrome protein family member 2 | 165 | 1e-010 |
| Q9Y6W5 Wiskott-Aldrich syndrome protein family member 2 | 155 | 2e-009 |
| O08816 Neural Wiskott-Aldrich syndrome protein | 152 | 4e-009 |
| Q91YD9 Neural Wiskott-Aldrich syndrome protein | 149 | 9e-009 |
| A4X4N7 Translation initiation factor IF-2 | 144 | 3e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9M2 Nuclear RNA binding protein, putative | 1457 | 3e-159 |
| Q2A9V8 Nuclear RNA binding protein, putative | 1308 | 6e-142 |
| Q2A999 Nuclear RNA binding protein, putative | 957 | 3e-101 |
| Q2A9H4 Nuclear RNA binding protein, putative | 923 | 2e-097 |
| Q8LB56 Nuclear RNA binding protein A-like protein | 755 | 7e-078 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17520.1 nuclear RNA-binding protein, putative | 968 | 8e-105 |
| AT5G47210.1 nuclear RNA-binding protein, putative | 777 | 1e-082 |
| AT4G16830.1 nuclear RNA-binding protein (RGGA) | 769 | 1e-081 |
| AT4G16830.3 nuclear RNA-binding protein (RGGA) | 686 | 4e-072 |
| AT5G47210.3 nuclear RNA-binding protein, putative | 636 | 3e-066 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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