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Information for unigene UN08687

FASTA Sequence
Unigene ID: UN08687Length: 1042 SSR 
GGGTCTCCCCCTTAGCTCCTCACCTAGTTGACTCAACAACGACTCTGCCGTTCCCTTTTAGCAGCCATGACGACAAGTTCTCCTTG
CAGGACCATAAACGCTAATAATGCTGTCACCGCGCCGCCGTCGCCTTCGGGAATGATCTTCCACGGCTGTCGTGATTCCGTTCCGA
TCGATAAGAGACTTGCCAAATCAAGCTCACGTGGATTGAATTTGCCGACGAAGAGATTGGCTTGGAGCTTAAGTTCTCCGGGGAGG
TTGTTGCTCTCTTCTTCTTCTTCTTCTCCCGTGGCGTCTAGTTCTACGTCGGCGGCTGTGACATCGAATTCTTCGAACCGATTGGA
AGCTTTAGAAGAGGGGATTGAGAAGGTAAAAAGGGTCGATAGATTCCACTTAATCCATAAAATGTCATTCACTTTAGGTTTTATAT
TTTGGAGCTGAGATCGATCTTTTAGTGTTTGAAACCTGAGTCACATGTTTACATTAGGATGCTTGAGTTGCCAGCGTGGACAGACA
TAGTGAAGACTGGTAAGCTTAAGGAGCTTGCTCCATATGACCCTGACTGGTACTACATCAGAGCTGCATCCATGGCGAGGAAAGTG
TACCTGAGAGGTGGACTTGGAGTCGGTGCTTTCCGCAGGATCTACGGAGGAAGCAAGAGGAACGGAAGCCGTCCACCTCATTTCTG
CAAGAGCAGTGGTGGTGTTGCTCGTCACATTCTTCAGCAGCTTCAGACCATGAACATTGTCGACCTTGACACCAAGGGGGGAAGGA
AGATAACATCAAGTGGTCAGAGAGATCTTGACCAAGTCGCTGGAAGGATCGCAGCAGAAGCCATCTAAATCAAGATCCTCATCACA
ATTGCTCCAGAGTTTTTGTGTTTTGAGTTTAGTTATATGTATTGAAATATTTGCATTTGAAAACATTATTGGATGGAATTCCTCTC
ATTTTTGTTTTGATAAGATTTTTTTTTTTCACTTTTCTGCTTCTTCTTTTTTATTCTCAGCAACTTCTGGCTATATATTTTGATAT
TATCTACTAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_200925 40S ribosomal protein S19-3 [Arabidopsis thaliana]5854e-058
NP_186857 40S ribosomal protein S19-1 [Arabidopsis thaliana]5764e-057
XP_002884301 40S ribosomal protein S19 [Arabidopsis lyrata subsp. lyrata]5764e-057
NP_197056 40S ribosomal protein S19-2 [Arabidopsis thaliana]5712e-056
XP_002284393 PREDICTED: hypothetical protein [Vitis vinifera]5424e-053

Swiss-Prot top hits (Blast detail)Scoree value
Q9FNP8 40S ribosomal protein S19-35852e-059
Q9SGA6 40S ribosomal protein S19-15762e-058
Q9LF30 40S ribosomal protein S19-25717e-058
P40978 40S ribosomal protein S194597e-045
Q94613 40S ribosomal protein S193692e-034

TrEMBL top hits (Blast detail)Scoree value
Q67ZX8 40S ribosomal protein S19-like5853e-058
Q0WSH0 40S ribosomal protein S19-like5711e-056
A5C4J2 Putative uncharacterized protein5423e-053
A9PGL4 Predicted protein5413e-053
C6T4Z6 Putative uncharacterized protein5387e-053

Arabidopsis top hits (Blast detail)Scoree value
AT5G61170.1 40S ribosomal protein S19 (RPS19C)5851e-060
AT3G02080.1 40S ribosomal protein S19 (RPS19A)5762e-059
AT5G15520.1 40S ribosomal protein S19 (RPS19B)5716e-059
AT4G19390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13720.1); Has 553 Blast hits to 553 proteins in 219 species: Archae - 18; Bacteria - 407; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).2859e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  50%
 
72  50%

Unigene MembersMember information