Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN08713

FASTA Sequence
Unigene ID: UN08713Length: 874 SSR 
GGGGATCGTCTTTACCTTTTGATCCTTCTTCTTCTTCTTCTTTTCCGCTAGGTTTCTCTCAAACGAACAGATCCTCCATTCGTCTC
AAAGTTACCTTGTGCGATGAAGACAGCTAAGGGGAAAGGTAAAGCTAAGACCACTAAGGAAGCCTTGAAGCCAGTTGATGACAGAA
AGGTGGGGAAGAGGAAGGCACCGGCTGAGAAGCCTAGCAAGAGGGAGACTCGTAAAGAGAAGAAGGCCAAGAAGGACCCTAACAAA
CCCAAGAGAGCTCCTAGTGCCTTCTTTGTCTTCTTAGAAGATTTTAGGCAAACGTTCAAGAAAGAGAATCCAGATGTGAAGGCTGT
CTCTGCTGTTGGGAAAGCAGGAGGACAGAAATGGAAGTCAATGTCTCAGGCTGAAAAAGCTCCATATGAAGAGAAAGCTGCAAAGA
GGAAAGCTGAATACGAAAAGCTTATGGATGCATACAACAAAAGCATGGAGGAAGGGAGTGATGAATCTGAAAATTCTTTATCAGAA
GTGAATGATGAAGATGAAGCTAGTGAAGAGGAAGAGAAGGTAAAGAAGGGAAAGGCAGGTGAGGATGATGACGATGATGATGAAGA
TGACGATGATGATGAAGATGACGAGGAAGAAGACTAAACTGGAGATAGAGATCAGAGTTTGGATCTCGAGGATAACTACAGGTTCA
GAAGGCAGAAGTAAGTATATTTTGTATTTTGTGTGTTGACAACTATAGATCGAAATGGTGTGTTGTGCTCTCCTTTTTTTTTCTTT
TCCTAAGAAAGCCAAACAGTTTCTTAGCGGTTCATGTAAGTTTATTTCATCTTTCTATCCACAACGTACACTGTACCAATACCGGC
TTTAGTGATCACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_190756 high mobility group protein B1 [Arabidopsis thaliana]8022e-083
BAJ33790 unnamed protein product [Thellungiella halophila]7994e-083
NP_974413 high mobility group protein B1 [Arabidopsis thaliana]7842e-081
XP_002877829 hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp. lyrata]7654e-079
NP_001190062 high mobility group protein B1 [Arabidopsis thaliana]7072e-072

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein3672e-034
P40621 HMG1/2-like protein3663e-034
P40619 HMG1/2-like protein3645e-034
P40620 HMG1/2-like protein3531e-032
P27347 DNA-binding protein MNB1B3484e-032

TrEMBL top hits (Blast detail)Scoree value
O49595 At3g51880/ORF138021e-083
Q3EAL6 AT3G51880 protein7842e-081
C6SXC8 Putative uncharacterized protein5735e-057
C6SVP1 Putative uncharacterized protein5726e-057
A5BH86 Putative uncharacterized protein5718e-057

Arabidopsis top hits (Blast detail)Scoree value
AT3G51880.1 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor8036e-086
AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor8036e-086
AT3G51880.2 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7858e-084
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3815e-037
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3781e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  33%
 
74  67%

Unigene MembersMember information