RadishBase

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Information for unigene UN08717

FASTA Sequence

Unigene ID: UN08717	Length: 1289	SSR
GGACAAATATCTTTTCTTTATAGCATTTCTAGATTTACAGAAGCTTCCTTCAGATTCACAATCTCATCAAGCACACACAAACCCTT TCAAAATGATCTAAAGAAGAAACAAGAACCCTACTATACAATCAAATCACAACCAACCCAGAAAGCAAAAGTTTCCTCTTTTACTT TCTTCTCTTAACTCTTTTCTTCCTCTTGTTCTTGAGGAAACTAGGGTTTGATTTTATTCTCCAAAAGAAAAGGTCTTTCATCCAAA AAAAGCAAAACCCAGCTCGTGTTTGTGTGTGTGTGTGTGTGTCTGTATATAGATAAACATTTACATCCCCTAATAAGGTTACATAT CAAAATGGGAAGGGGAAGAGTAGAGCTAAAGAGGATAGAGAACAAGATTAACAGACAAGTAACGTTTGCTAAGCGTAGGAACGGTT TGCTGAAAAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAGGTTTCTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTATGAA TTCTGCAGCACCTCCAACATGCTCAAGACACTGGACAGATACCAGAAGTGTAGTTATGGTTCAATTGAAGTCAACAACAAACCTGC CAAAGAACTCGAGAATAGCTACAGAGAGTATTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACTTCAGCAGAGAAATTTACTTG GAGAAGACCTTGGACCTTTGAACTCAAAAGAGCTAGAGCAGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGTTCGCTGCATC AAGACACAGTATATGCTTGACCAGCTCACTGACCTCCAAGGCAAAGAGCATATGTTGCTTGAAGCCAATAGAGCTTTGTCAATGAA GCTGGAAGATATGATAGGCATGAGAAGTCACCACGTAGGAGGGACATGGGAAGGCGGTGATCAGCAAAATGTTGCCTATGGACATC ATCAGACTCAATCTCAGGGACTGTTCCAGTCTCTTGAATGTGATTCCACTTTGCAAATTGGGTACAACCATCCAGTGTGTTCAGAG CAAATGGCTGTAACGACTCAAGGTCAGATCCAACCAGGAAACGGTTACATCCCTGGCTGGATGCTTTGAGTGATGCATGCTTCTGA TCTAATGATGAGAACAAGCTGGATCTTTAAGCGTTCAAGTGGTGGGTTCTTGATGATGAAAATGAGATTTGGATTATATTAGTACG GAATTTAATGAATTGTGTTTATGTAATGACATAAGTGGCTATATATAGTTGTGATAGCCTTCAACACCACTCTTCTGTTGCAGAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884314 SEPALLATA2 [Arabidopsis lyrata subsp. lyrata]	1222	7e-132
AAU82009 SEPALLATA2 [Arabidopsis thaliana]	1220	1e-131
AAO42085 putative floral homeotic protein AGL4 [Arabidopsis thaliana]	1219	2e-131
NP_186880 developmental protein SEPALLATA 2 [Arabidopsis thaliana]	1218	2e-131
ABD60322 SEP2 [Boechera stricta]	1218	2e-131

Swiss-Prot top hits (Blast detail)	Score	e value
P29384 Developmental protein SEPALLATA 2	1218	9e-133
P29382 Developmental protein SEPALLATA 1	1130	1e-122
Q03489 Agamous-like MADS-box protein AGL9 homolog	733	2e-076
O65874 MADS-box transcription factor 1	717	1e-074
Q38694 Agamous-like MADS-box protein AGL9 homolog	697	2e-072

TrEMBL top hits (Blast detail)	Score	e value
Q5XXL5 SEPALLATA2	1220	8e-132
Q84WB0 Putative floral homeotic protein AGL4	1219	1e-131
Q1KV04 SEP2	1218	1e-131
Q5XXL4 At3g02310	1218	1e-131
Q5XXJ5 SEPALLATA2 (Fragment)	1207	3e-130

Arabidopsis top hits (Blast detail)	Score	e value
AT3G02310.1 SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor	1219	6e-134
AT5G15800.1 SEP1 (SEPALLATA1); DNA binding / transcription factor	1131	1e-123
AT5G15800.2 SEP1 (SEPALLATA1); DNA binding / transcription factor	1001	1e-108
AT1G24260.1 SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor	696	3e-073
AT1G24260.2 SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor	696	3e-073

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			50%


12	1			17%


9	2			33%

Unigene Members	Member information