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Information for unigene UN08723

FASTA Sequence
Unigene ID: UN08723Length: 1469  SNP
CTTATAGTAAACTTCAAAACTTTGATAAAAGTTGCAAAGAGAGTTGACAAGTTTGACATGTTTTGAAATAAAAGAAGCAAAGGAAA
TAAAGAGATATATAGACACCTACATTAGTAGACTCCTCTACTTACTAATCTCTCAAGACAATGAAACTGATAACCTTACACAAACA
TCAGAGCCACAAACATTCTAAGAATGTGTCGGCAAATGGATTGATAAATGAACCAGAGATGGTCTCACCTCAACAGAACTTCCAGT
GGTTGTCGCAGTTAACACACGTAACATAAGTCGTCATCGGCTCATCAGCACTCCTCGTCTGCATCTGATAGTAAGTGCATTTCCTC
TGACCACACCTCCCACACTTGAACTGATCCGTACTCGCTTTCGGCGCCTGACCACGCTCACAATCGAACAGAAACTTCTCCTTGAT
CTGGTTGGTCTCCTGTTTCCTCTTGTCGCTCGCCATCTCTTCACCAGACAGCGTAATGAGTTTCTCCGGCGACACCTCCCCTGTGA
GCACTCTCCTCCTCAGGTCCGGATTGTTACTGTCCCTCAGGTTGAACATTATAGATCTGTACTTCACCTTCTGAGCTCCCGTCGAC
CGTCCCAGCTTCTCAAACATGTGAGACTCCACAGCCACAGCTACGCGGATCGGATCGCATCCAACAACTCTGGCTCTATCGTAATC
ATCAGATTCGTCATGGACCTTGGACATGGCGTCCACAAGCAGCTCGCGGATTTTGTCACGCACGGGGTCGTTGCATTTGACCATCG
CAGTCAGCTTCGGTGCACCATTAGTTGGTGGTGCCTTAGCAGGAGCCTTTTCATCTTTGACACCAGTCTGACCACGATGCTCTATC
TTAACTCCGTTGTTGACTGGTTCTTTTCTCTCTACCTTGATGCTCTTAGCTGAATCACCCCTCTGAAGCTTCTGGACTTTCACAGG
CGCGGGATTTGCATCCTTCTTAGACTTGGATGTCTCTTCGATGACAAGCTTCTTCCATATATCGAGAAGATCAGTAGCTACGGTTT
TGATTTCGTCGATAGGATGTTTTGAAAGAGACCTCAGCTTCTTACCTACCTGAGTGGCGACGAGCATGTCGTATGTGATGGGAAAC
TTCTTGAGCTGTTTAAGGGCATCGAGAGATCGAGAAACCTCCGGACCTGAGGAGGCTACACCGTCGATCGCCGCCGCATCGGCTGC
CTTCTTCGCCGCCTCGAACAATTCGACCAATTCGCTTTCCATCGTCGTTCGAAAAATCGCCAACTTTCCAAATAGCCCCCGACAGA
TCCAAGCCGATTTAGAACAGAAAGAGAGAGAAAAAATAAACTGAAAGATTGCAACTTGCGATTGATGAAGAAAGAATGAGATGTGT
TCGGGGCGGAACTTGGTTCTTGTCGGGACGGAGAAGATAGAGGGAGAGATTACGTAGTGAAACAGTGTTGTTATTTGGCTTGATCA
ACGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002323085 predicted protein [Populus trichocarpa]10767e-115
ABK25146 unknown [Picea sitchensis]9843e-104
XP_002280979 PREDICTED: hypothetical protein [Vitis vinifera]9647e-102
BAJ34462 unnamed protein product [Thellungiella halophila]9621e-101
ACN41014 unknown [Picea sitchensis]9602e-101

Swiss-Prot top hits (Blast detail)Scoree value
P23881 Transcription elongation factor A protein 33586e-033
Q15560 Transcription elongation factor A protein 23542e-032
Q2KI09 Transcription elongation factor A protein 33514e-032
O75764 Transcription elongation factor A protein 33505e-032
Q148K0 Transcription elongation factor A protein 23399e-031

TrEMBL top hits (Blast detail)Scoree value
B9IGU7 Predicted protein10765e-115
A9NWY5 Putative uncharacterized protein9842e-104
C0PT74 Putative uncharacterized protein9601e-101
Q9ZVH8 Putative elongation factor9063e-095
Q8VXZ6 Putative elongation factor9036e-095

Arabidopsis top hits (Blast detail)Scoree value
AT2G38560.1 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS); DNA binding / RNA polymerase II transcription elongation factor/ transcription factor9071e-097
AT2G42730.1 F-box family protein3083e-028
AT4G18720.1 transcription elongation factor-related2805e-025
AT2G13640.1 Golgi GDP mannose transporter (GONST1)1775e-013
AT5G27310.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27780.1); Has 410 Blast hits to 363 proteins in 79 species: Archae - 0; Bacteria - 42; Metazoa - 102; Fungi - 14; Plants - 69; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).1588e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
83  38%
 
122  25%
 
191  13%
 
212  25%

Unigene MembersMember information