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Information for unigene UN08731
| FASTA Sequence |
| Unigene ID: UN08731 | Length: 731 |
| SNP | CGGGTTCTTAGAAAAAAAATTAAATTTTAAACATCTCATTCTTCAAATTCAGATGCATCAATGGGATTATGTATTACTTGGGTTAT
TGGTACCTTTCTCACAAAACAAAACAGCTAAGCTCACATCAAATTCTAAAACCTTCAAAATCCGCAAGTTATCTCCAAAATCAAAC
CTTGCTTCCGCTGCTGTCGTTGCTGCTACCACCTAGAGTCCTCCCAACACCCTGGAATGAAACCTTACACTTCTCTCGTTCCTACC
ATGAGCAAAAGAAAGATAGTTAACTTGAATCACAGCAGCTAAGCAGTTCCACATGTTACACTGTCATTAACAATTCTTGGAGAACC
ATATATGCTTTCGAGAACAACGTTTCTGCCTTTAGGAGCTAAAGTAACTCCAACAAGATCCGCAAGTTTGTTGTCACCAGCTTGAA
GCTTCTTAATAGCTGTCCCGTCTTTATTGAAATGCAACTGCTTTGCCGCTGCGTAGATTTTGGGAAACCTCGCTTTCCTTCGCAAA
TTCATCGGCCATGGCTGCGATTCGAAGCTTCCGGAGATCACTACAACCGGAGACAGTTGGAAGATTCTCTCTAAGCAATTCCGATG
AGAGAAACCGGAGCTCCGTGAGGCCATCGACGCACAAGAACGCGGAAGAGGAGGAGGAAGAAGCGGAGAGAGAAACAGGAGAGGTT
GGTGTTAAACTCATCGGTTCCACGCGCCAATCAAAAATCCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001032083 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 293 | 1e-024 |
| BAF00280 RuBisCO subunit binding-protein beta subunit precursor [Arabidopsis thaliana] | 293 | 1e-024 |
| BAB11583 RuBisCO subunit binding-protein beta subunit precursor; chaperonin, 60 kDa [Arabidopsis thaliana] | 293 | 1e-024 |
| XP_002864459 ATP binding protein [Arabidopsis lyrata subsp. lyrata] | 293 | 1e-024 |
| XP_002523404 rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] | 269 | 9e-022 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 255 | 2e-021 |
| P08927 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 254 | 2e-021 |
| P21240 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 245 | 3e-020 |
| Q42694 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 153 | 1e-009 |
| Q03VC3 60 kDa chaperonin | 148 | 5e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z361 AT5G56500 protein | 293 | 1e-024 |
| Q0WRG9 RuBisCO subunit binding-protein beta subunit | 293 | 1e-024 |
| Q9FHA9 RuBisCO subunit binding-protein beta subunit; chaperonin, 60 kDa | 293 | 1e-024 |
| B9SBN5 Rubisco subunit binding-protein beta subunit, rubb, putative | 269 | 6e-022 |
| P93570 Chaperonin-60 beta subunit | 262 | 4e-021 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56500.1 ATP binding / protein binding | 293 | 6e-027 |
| AT5G56500.2 ATP binding / protein binding | 293 | 6e-027 |
| AT3G13470.1 chaperonin, putative | 253 | 3e-022 |
| AT1G55490.1 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 245 | 2e-021 |
| AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 245 | 2e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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