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Information for unigene UN08829

FASTA Sequence
Unigene ID: UN08829Length: 717  SNP
CGGTAGAGACGAAAATCAAGCTAAATCCAAAGTTGTGCATAACAAGTTGTAGTAGATAGTACGAATAATCCCAGTTAACATAAAAG
GGGAAGAAAACAAAGCAATAGTGAAACTGTTCTTCTCCCTAAAAACTAGCAGCTAAAAACAATACAACAGAAGATACTCCATAAGA
CAAATCGATGATACATCTTCTAATCATCATCTTCCTCCTCTTCACTTGCGCCTTCGTTGACTTCAGACTTGGACTTGTCAGAGTCA
TCATCTCCAGCTGTGCTAGTTCCATTAGCCAATTTCATGTTGTATTTTTGCATAGTCTTGGTATATTCACTCTTTTTAGTCTCTGC
CTTGGCTACGAAAGGAGCTTTGTCTTCATCAGTCATGGATTTCCATTTAGCTCCAGCAGCTTTACCAACAGCTCCGACGGATTTGT
TGTCAGGGTTAGCTAGATTGAACTCCTTGCGGAATCCCTCCAGGAAGACGAAGAAAGCACTAGGAGGCCTCTTAGGCTTGTTAGGA
TCCTTGGCGGCTTTCTTTCCAGCTTTCTTACCTCTCGTCTTCAATCTGTCATCAGTGCCCTTCGCTTGAGCTTTGGTTTCACCACC
TTTCATCTCCGAGAGATCTGTGAACGTTAGGGTTTTTTTTTATTTTGACCAGAGAGACGACGATTCAGATTTTTTTTTCTCTTTCT
CCGCTTTTTACCCTTTCCTTTTGATGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886121 hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp. lyrata]5565e-055
NP_179347 high mobility group B4 protein [Arabidopsis thaliana]5459e-054
CAA74403 HMG protein [Arabidopsis thaliana]5441e-053
AAM64404 putative HMG protein [Arabidopsis thaliana]5431e-053
AAK43965 putative HMG protein [Arabidopsis thaliana]5403e-053

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein4083e-039
P40619 HMG1/2-like protein3644e-034
P27347 DNA-binding protein MNB1B3573e-033
P40620 HMG1/2-like protein3384e-031
P40621 HMG1/2-like protein3294e-030

TrEMBL top hits (Blast detail)Scoree value
Q42344 HMG1-like protein5456e-054
O49598 HMG protein5448e-054
Q8LCY0 Putative HMG protein5431e-053
Q94K96 Putative HMG protein5402e-053
B9DG70 AT2G17560 protein5223e-051

Arabidopsis top hits (Blast detail)Scoree value
AT2G17560.1 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5454e-056
AT2G17560.2 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5454e-056
AT2G17560.3 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5241e-053
AT4G35570.1 HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor4461e-044
AT1G20696.1 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3805e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  40%
 
112  20%
 
64  40%

Unigene MembersMember information