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Information for unigene UN08843
| FASTA Sequence |
| Unigene ID: UN08843 | Length: 683 |
SSR | | GGATTCTTCTTCTTCTTCTTCTTCCGGCGAGATATTTGGAAACCCGAAAGCGCGATTTAGCTGGTTTCAACCCCTTTTCTTCGGAC
GAGCAGAGTTTGCTTAGAGCCAACATGAGTAGTAGGCCAATGGAAGAGGATACCAACCAGGGAAAGACCGAAGAGGAGGAGTTCAA
CACGGGACCCCTTTCTGTTCTGATGATGAGTGTTAAGAACAACACTCAAGTCTTGATCAACTGCCGCAACAACCGGAAACTCCTTG
GCCGTGTTAGGGCTTTCGACAGGCACTGCAACATGGTTCTCGAAAATGTCAGAGAAATGTGGACTGAGGTACCTAAAACTGGGAAA
GGAAAGAAGAAAGCTCTTCCCGTCAACAGAGATCGCTTCATCAGCAAGATGTTTCTCCGTGGTGACTCTGTCATTATCGTCCTCAG
GAATCCCAAGTAAGACAGAAAGAAAGAGTTTGAGATGTCTGTTCGGAGTTGTTTCCTCTTCACGCTTCTCGTGACAGTCCTAATTG
TTGCATCAATGGAGATACACCTTTCATTATGAGTCTTAAAATCTAGTGTTCCCTTTGTATTTTTCACTTATGTTCTCTCTTATGAC
TAAGACGCAGCGTTGATCACTTGTGTTCTGTGTCTTATCTCTCGTGGGTGCTCTTTACATGATAATTTCACAGCTTCCGGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566107 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] | 559 | 2e-055 |
| XP_002878480 predicted protein [Arabidopsis lyrata subsp. lyrata] | 553 | 9e-055 |
| XP_002880318 hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp. lyrata] | 546 | 6e-054 |
| NP_850477 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] | 542 | 2e-053 |
| ACF06449 small nuclear ribonucleoprotein-like protein [Elaeis guineensis] | 520 | 6e-051 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q3SZF8 Small nuclear ribonucleoprotein Sm D2 | 454 | 1e-044 |
| P62316 Small nuclear ribonucleoprotein Sm D2 | 454 | 1e-044 |
| P62317 Small nuclear ribonucleoprotein Sm D2 | 454 | 1e-044 |
| Q9VI10 Probable small nuclear ribonucleoprotein Sm D2 | 449 | 5e-044 |
| Q18786 Probable small nuclear ribonucleoprotein Sm D2 | 418 | 2e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RUH0 Putative small nuclear ribonucleoprotein D2 | 559 | 1e-055 |
| Q8L3W7 Small nuclear ribonucleoprotein-like protein | 546 | 4e-054 |
| O22247 At2g47640 | 542 | 1e-053 |
| B3TLL8 Small nuclear ribonucleoprotein-like protein | 520 | 4e-051 |
| C6T0Y9 Putative uncharacterized protein | 520 | 4e-051 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47640.1 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 560 | 6e-058 |
| AT2G47640.4 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 560 | 6e-058 |
| AT3G62840.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.4); Has 535 Blast hits to 535 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). | 560 | 6e-058 |
| AT2G47640.2 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 543 | 6e-056 |
| AT2G47640.3 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 543 | 6e-056 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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