RadishBase

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Information for unigene UN08873

FASTA Sequence

Unigene ID: UN08873	Length: 802	SSR
GGGTCTTGGGATTGGGCTATTTGCAGAAACTCAAAGTCAAAATCAGTCCAAAAAGAAACCAACGACGAACTCCATTCTTCTTTCTC TATCGATCTCCTCTTCTTTGCTTCTCTCTCTCTCTCTCTCTGACCATGGACGCTCTTGTTGCTCAGCTGCAGATGCAATATCGTAA CTACACCGCTTCTCTCTACCAACAGGGCTTTCTGGATGATCAGTTTACTGAGTTAAAAAAGCTTCAAGATGATGCTAGTCCTGATT TTGTGGCCGAGGTTCTCTCCCTTTTCTTTGAAGATTGTGTCAAGCTTATCGGTAACATGGCTCGAGCTTTGGACCAGACAGGAACT GTAGATTTTAGTCAGGTTGGTGCGAGCGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGGTGCCAAGAGGGTGAAAGGCTTGTG TGTTACCTTCAAGGAATACTGTGAGGCCAATAACTACGAAGGGTGTGTGAGATGTCTGCAGCAGGTGGATATCGAGTACAAGGCCC TAAAGACAAAGCTTCAAGATATGTTCAATCTTGAGAAACAAATCGTTCAAGCTGGTGGTAAAGTTCCTCAAGTGGATAATTAACTA AAAGACTAGTCCAGAAGAACATGATGTTGATGATGATGATGACTCAAATTTGCATTCTTCAATTTCTCATTTTAATTTATTTTGTT TGCTCAGAAGAAACTCAGCAAAAAAAGAAAGAGATGATTCTTGTTGATAATAATCTTTAGTACATTTCTGAAACAATCCATGGTGT GTATGATGATAACTGGTTTGCTCCTGGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_189581 histidine-containing phosphotransfer protein 2 [Arabidopsis thaliana]	713	3e-073
XP_002877175 histidine-containing phosphotransmitter 2 [Arabidopsis lyrata subsp. lyrata]	708	1e-072
XP_002870792 histidine-containing phosphotransmitter 3 [Arabidopsis lyrata subsp. lyrata]	666	1e-067
NP_198750 histidine-containing phosphotransfer protein 3 [Arabidopsis thaliana]	651	5e-066
BAA37111 ATHP2 [Arabidopsis thaliana]	625	6e-063

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZNV8 Histidine-containing phosphotransfer protein 2	713	2e-074
Q9SAZ5 Histidine-containing phosphotransfer protein 3	651	2e-067
Q8L9T7 Histidine-containing phosphotransfer protein 5	563	4e-057
Q9ZNV9 Histidine-containing phosphotransfer protein 1	400	3e-038
Q9LU15 Histidine-containing phosphotransfer protein 4	320	6e-029

TrEMBL top hits (Blast detail)	Score	e value
Q67XQ1 At1g03430	563	6e-056
Q659H7 Putative histidine-containing phosphotransfer protein 3	500	1e-048
B9IG70 Histidine phosphotransfer protein	499	2e-048
Q659H9 Putative histidine-containing phosphotransfer protein 1	499	2e-048
B9HCL1 Histidine phosphotransfer protein	498	2e-048

Arabidopsis top hits (Blast detail)	Score	e value
AT3G29350.1 AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer	713	1e-075
AT5G39340.1 AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase	651	2e-068
AT1G03430.1 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase	563	4e-058
AT3G29350.2 AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer	516	1e-052
AT3G21510.1 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1); histidine phosphotransfer kinase	400	3e-039

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			50%


12	2			50%

Unigene Members	Member information