Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN08874

FASTA Sequence
Unigene ID: UN08874Length: 799 SSR 
GGGTTCTCCGCCACACTAATCTCCCAGGAAGAGGAGCGAGCAGCCAAAAAAAAAAAAAAAGAGGAGGAAATGGTAGCGCTGAAGCA
TAGAAGCGGCTCGCCGCATCGGTGATGAAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCAAATGAAACCGCCGATATCTCCATGGC
CAACTCCCGCCAAAACATCAGGAAGTTGGTGAATGGTGGTTTCATCATCAAGAAGCCAACCAAGATCCACTCTCGCTCCAGGGCTC
GCCGCATGAAGATTGCCAAGATGAAGGGTCGTCACTCTGGATATGGTAAGAGGAAGGGTACGCGTGAAGCTAGGTTGCCAACAAAG
GTACTGTGGATGCGCAGGATGCGTGTGCTAAGGCGTCTCCTGAAGAAGTACAGAGAAGACTTTGTCTGATCGGTTTGAGGCTAAGA
GGGCTAAGAACAAGGCTAGCCGAGAAAGGAAACATGCTAGGATAGAAGAGCGTCTTGCTAAGGGTCCTGGTGGAGATGTCGAGCCT
GCGACTGCACCACCAGCTGCTGCTGCTGCTACTACTGCTCAAACCGCAGAGGTACCGAAGAAGAAGTCTAAGAAGTGAAGAGGATA
GTCATCAAGCCTCAGTTCATTTTCCTTGACTTGGGAGAAGTTTTTTGAATGTTTTATGAAGTTGCTTTTGTTGAAATACTTTCTTG
GCGCAGAAAAACACAATTGTTATGCTTTTAAGGATTTTTTTAGCTTTTCAGTTTACTTTCTTTTTCGAGACATTTTGTTCTCTGTT
CCTTTCTGAATGGTTTTTGTTATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_171777 60S ribosomal protein L19-1 [Arabidopsis thaliana]5092e-049
XP_002892123 EMB2386 [Arabidopsis lyrata subsp. lyrata]5092e-049
AAL58923 At1g02780/T14P4_3 [Arabidopsis thaliana]5038e-049
XP_002523128 60S ribosomal protein L19, putative [Ricinus communis]4841e-046
ACU24120 unknown [Glycine max]4841e-046

Swiss-Prot top hits (Blast detail)Scoree value
Q9SRX2 60S ribosomal protein L19-15097e-051
P49693 60S ribosomal protein L19-34774e-047
Q9LUQ6 60S ribosomal protein L19-24748e-047
P14329 60S ribosomal protein L193977e-038
O42699 60S ribosomal protein L19-B3888e-037

TrEMBL top hits (Blast detail)Scoree value
Q8W101 Ribosomal protein L195035e-049
B9SAV9 Ribosomal protein L194849e-047
C6TMH8 Ribosomal protein L194849e-047
B9H3I4 Ribosomal protein L194831e-046
A9PB34 Ribosomal protein L194821e-046

Arabidopsis top hits (Blast detail)Scoree value
AT1G02780.1 emb2386 (embryo defective 2386); structural constituent of ribosome5097e-052
AT4G02230.1 60S ribosomal protein L19 (RPL19C)4773e-048
AT3G16780.1 60S ribosomal protein L19 (RPL19B)4748e-048

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  50%
 
92  50%

Unigene MembersMember information