RadishBase

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Information for unigene UN08875

FASTA Sequence

Unigene ID: UN08875	Length: 900	SSR
AACCGTCCCGTCCCCGTCTTTATAGAAACGAAATAGATTCTCTTCTCTTCTCTTCTCTTCTCTTCTCCTCTCTGCCTATCAATCAT AGGTGGGGATCAGGGATCTCGATTTCAATGTCTTACGCTTACCTCTTCAAGTACATCATCATCGGCGATACAGGAGTAGGGAAATC ATGCCTTCTGCTACAGTTCACGGACAAGAGGTTTCAGCCGGTGCATGATCTCACCATTGGTGTTGAATTTGGGGCTAGGATGATCA CCATCGACAACAAGCCCCTCAAACTCCAGATCTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCTTACTATAGA GGTGCTGCAGGTGCATTGCTTGTCTATGATATCACAAGGAGGGAGACGTTTAACCATCTAGCTAGCTGGCTAGAGGATGCGAGGCA GCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATAAGTCTGATCTTGACCACAGGAGGGCAGTGACCACGGAGGAAGGAG AGCAGTTTGCAAAGGAGCACGGTCTTATTTTCATGGAAGCCTCTGCCAAGACTGCTCAGAATGTCGAAGAGGCATTCATAAAGACA GCGGCAACAATATACAAAAAGATCGAAGATGGTGTGTTTGATGTGTCAAATGAGTCGTATGGAATTAAAGTTGGATATGGAGGAAT CCCGGGGCCATCAGGTGGAAGAGACGGATCCACATCGCAAGGAGGAGGTTGCTGCGGCTAAGATGGGGAATAGTGTCTTTTTTTAT CATATAAGCAAAAATCTCTTCTGTTTAAACTATATAATAGTTGTAAATCGTTTGGTTTTCGATTTGGTGACTTGTCTTGTGGTGGA TTTCGGATTATTCATTTATATATAATATGTGTTTTGCATA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_193450 RAB GTPase homolog B1C [Arabidopsis thaliana]	1080	1e-115
XP_002308739 predicted protein [Populus trichocarpa]	1057	6e-113
XP_002329939 predicted protein [Populus trichocarpa]	1055	1e-112
AAL28022 small GTPase Rab2 [Nicotiana tabacum]	1053	2e-112
CAA98165 RAB2A [Lotus japonicus]	1051	3e-112

Swiss-Prot top hits (Blast detail)	Score	e value
P49104 Ras-related protein Rab-2-B	1003	5e-108
P49103 Ras-related protein Rab-2-A	980	2e-105
P36863 GTP-binding protein yptV4	925	5e-099
Q39570 GTP-binding protein YPTC4	922	1e-098
Q01971 Ras-related protein Rab-2A	870	1e-092

TrEMBL top hits (Blast detail)	Score	e value
P92963 At4g17170	1080	8e-116
A9PGF6 Predicted protein	1057	4e-113
A9PCI9 Predicted protein	1055	7e-113
Q946G3 Small GTPase Rab2	1053	1e-112
Q40208 RAB2A	1051	2e-112

Arabidopsis top hits (Blast detail)	Score	e value
AT4G17170.1 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase	1081	4e-118
AT4G35860.1 ATGB2 (GTP-BINDING 2); GTP binding	957	9e-104
AT4G17160.1 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A); GTP binding	842	2e-090
AT4G35860.2 ATGB2 (GTP-BINDING 2); GTP binding	722	2e-076
AT5G45750.1 AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding	497	2e-050

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			22%


8	4			44%


10	1			11%


12	1			11%


6	1			11%

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