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Information for unigene UN08892

FASTA Sequence
Unigene ID: UN08892Length: 842 SSR 
TTGTAACTTTACAAAACAAGTATGTCTCAAAGTCTTGTCTGAAAATACAGCTGCTTCGGACAGATTCATCAATCACTCCATAATTC
ATGTATAATAAAGATAAGTCACAAGCCAACGGGGAAGAAGAAGAAGAAGAAGAAGAAACATACAACAAACACTGCAAACTGAAATT
AGATATACGTCTGACTGAGCATTCCTCTCGACTTCCAAATAGCATTAGAACACGTCAGGATGAAACCGTCCCGGGATTGACCCGTT
GTTCTGCTGCGCTTGTTTCAGATGAAGCGTGAGAGCATAGTTATTGACCTCGAGAGTCCTCAGCTGCTCCTGGTACTGAGTGACCA
TCTGCCTCAGATGCTGCAGCTCCTGGCTTTGATCTTCGCTCTCTCTCTGCCGCTTCTGCTGCGTCACCACCGCTCGTTTCAGTAAA
CTGTTCTCCTGGACGATAGCTTCCAACTGCTGCCTCAGCATCGAGTTCTCCTGCTGGAGACTACTGCTCTGCGCCGCCGCCGCTGC
GTCGGCACCACCAGCACGTGCCTTGATTGACTTCTCCAAAGCTTCTAACGCTCTCGCAGCACGGTCTTTCGCGTCTTTCATGTCTG
AAGCATTCATCATCTCCCTGACGAAGAGGTCAACCCACTCAGCGCCATCCATGTTCAAGACTTCCTCCTTCCCTTGCTGCTGCTGC
TGAGGAGCTTCAACTTTTGCTTCCTCCTGGATAGATGATTCTGAGTTCTTATTGGTTGATTCTAAACGAAGCTGATTCAAACATCT
AATAGCAGAATCGATATCATCTCCACATTCCTCAATTGCCCTCTCAAGAATCTGATGATCCATATCGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868389 hypothetical protein ARALYDRAFT_493566 [Arabidopsis lyrata subsp. lyrata]7771e-080
AAK43955 unknown protein [Arabidopsis thaliana]7743e-080
NP_568521 Ubiquitin system component Cue protein [Arabidopsis thaliana]7734e-080
NP_001190418 Ubiquitin system component Cue protein [Arabidopsis thaliana]7672e-079
XP_002308974 predicted protein [Populus trichocarpa]5872e-058

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q94K99 Putative uncharacterized protein At5g324407742e-080
Q8H1Q3 Putative uncharacterized protein At5g324407733e-080
B9HA90 Predicted protein (Fragment)5871e-058
B9IMV5 Predicted protein5645e-056
A9PHI2 Putative uncharacterized protein5611e-055

Arabidopsis top hits (Blast detail)Scoree value
AT5G32440.1 LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).7865e-084
AT5G32440.2 LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3913e-038
AT1G80040.1 unknown protein3483e-033
AT5G02510.1 unknown protein2061e-016
AT1G80040.2 unknown protein1342e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
202  50%
 
102  50%

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