 |
Information for unigene UN08900
| FASTA Sequence |
| Unigene ID: UN08900 | Length: 850 |
SSR | | GGAATTGTGTAGTAGTACACACTCTCAGAAATCATTTAGATCGAAACCTCTCTCTCTGTTGCAGAAATGGCGGCAGCTTTAGCTTC
CAGACTTACCAAAGGACGTTCGTTGCTTGGAGGTCTTACCAATGCTTTCTCTGGTCTTGATGAGTTCATCCAGTGGAAGCATCCTT
TCTCAGCAGCAGCAGCAGCAACAGGAGGACGTTCATTCAAATGGGAACAAGACTCAGAGTCGTGGATAACTCTGGTGCAAAGGAGG
TGATGTGCATTCAATCTCTAAGGGGAAAGAAAGGAGCAAGACTTGGCGATATCGTCATTTGTTCAGTGAAAGAGTCTGCGCAAAAA
GTTGATGTGAAGAAAGGGAAAGACGCCATACAGAAAGGCAAAGTGAAGAAAGGGAGCGTCGTGTACGGTGTGGTTGTGCGTGCTGC
GATGCAGAAAGGGCGTGTCGATGGAAGCCAAGTAAGGTTTGATGACAACGCCGTCGTTATTTTGGGGATTAAGGAGAAAAAGACAG
ATGAAAAGGGTAAGGAAAAAAAGCAGAACTATAAGGGTGGTTTTAACCAACCGCTTGGTACCCGAGTGTTTGGTCCTGTCCCTCAC
GAGATGCGCCTCAAGAAACAGCTCAAGATCCTTTCTTTGGCTCAGCATCTTGTTTGAGACTGAGAGAGACTACACCACCTATCATC
TTGTTTGAGACTGAGACTACACCACCTATTATTATCTCTTTATTATATTATGCGACTGTAATCCATTCATCAGATAGTCAGACTTC
TGTTTTATTAATTAAACTATTTGACATTTTTTATTCCCAACTCTTAACGTCTCTCAGGCAATTAGTTTTCAGTCTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_173200 large subunit ribosomal protein L14 [Arabidopsis thaliana] | 544 | 2e-053 |
| AAF79479 F1L3.27 [Arabidopsis thaliana] | 544 | 2e-053 |
| AAL60451 HUELLENLOS [Arabidopsis thaliana] | 543 | 2e-053 |
| AAM63894 ribosomal protein, putative [Arabidopsis thaliana] | 543 | 2e-053 |
| XP_002892957 predicted protein [Arabidopsis lyrata subsp. lyrata] | 364 | 1e-032 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q3YRL9 50S ribosomal protein L14 | 180 | 1e-012 |
| B8E1E3 50S ribosomal protein L14 | 137 | 1e-007 |
| A1A079 50S ribosomal protein L14 | 135 | 2e-007 |
| A7NR53 50S ribosomal protein L14 | 135 | 2e-007 |
| A5USH9 50S ribosomal protein L14 | 135 | 2e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84JG5 Putative ribosomal protein | 544 | 1e-053 |
| Q9LNP8 F1L3.27 | 544 | 1e-053 |
| Q8LC24 Ribosomal protein, putative | 543 | 1e-053 |
| Q8W1X5 HUELLENLOS | 543 | 1e-053 |
| Q8RWH1 Putative uncharacterized protein At5g46160 | 215 | 2e-015 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G17560.1 HLL (HUELLENLOS); structural constituent of ribosome | 551 | 1e-056 |
| AT5G46160.1 ribosomal protein L14 family protein / huellenlos paralog (HLP) | 215 | 9e-018 |
| AT5G46160.2 ribosomal protein L14 family protein / huellenlos paralog (HLP) | 215 | 9e-018 |
| ATCG00780.1 encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex | 132 | 4e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
