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Information for unigene UN08962
| FASTA Sequence |
| Unigene ID: UN08962 | Length: 1542 |
| SNP | GGACTTTCCTTCCTTCCATGGTCGTCGTCGAAATTCAAATACACTCAATCAGCGAGCAGAGAAGGGGACTAATTCGTAGCGACTTG
GAAGATGAGGCCGAACATTGTTACCGAGGCTGGGATTCAAACAAGAGTTTCACAGTGGTGGAATGCTATACCTTTCCTCACCTCTT
CGGTGGTTGTGGTTTGCGGGCTCATTTACCTGATTTGCCTCTTAACTGGATACGACACTTTCTACGAAGTCTGCTTCTTACCCTCT
GCAATTCTATCGCGGTTTCAAGTTTATAGGTTTTACACGGCCATTTTATTCCACGGATCCATTCTTCATGTTATGTTCAACATGAT
GGCTTTGGTTCCTATGGGATCTGAGCTGGAGAGAATCATGGGATCTGTCCGCTTGTTTTACCTGACTATTTTGCTGGCAACGACCA
ATGCCGTATTGCATCTTCTTATAGCATCGTTGGCGGGATATAACCCTTTCTATCAGTATGACCATCTCATGAATGAGTGCGCGATT
GGATTCTCTGGAATCTTGTTCTCAATGATTGTCATAGAGACAAGTCTCAGTGGAGTCACCTCTAGAAGTGTGTTTGGTCTCTTCAA
CGTGCCCGCTAAACTATATCCATGGATCTTATTGATTGCATTCCAGCTTCTCATGACAAATGTTTCGCTGCTTGGTCACCTATGTG
GCATCTTGTCTGGATTTGCATATTCTTATGGCCTTTTCAATTTCTTGATGCCCGGCTCTTCATTTTTCTCCAACATTGAGTCAGCC
TCATGGATGGCTAGCTGTGTAAGGCGACCCAAATTCATTATGTGCACTGGTGGAAATCCTTCCAGTTACATGCCCACTTATTCTGT
ACAAAACACGACATCCAGTGGTTTCTCTACAGGAAATGCGTGGAGATCCTTGTCTTCATGGCTGCCACAGAGGGAAGCATCTAATC
AATCTTCTGAGGATAGTAGATTTCCGGGAAGAGGTAGAACTCTTAGCGGTACTGCCCGTGATCTAACCCCCCCAGCTGGAGAAACA
AACCCAAACCTCCATGCTAGACTATTGGAAGATAACACTCCAGACCGCCTTTCTGATGCAACTGTGACTGGCATGCCAGAGCCAAT
CCCCACCACAAGGCAGGTGCCAATAGCAAATGCAGCAGTCCTACCTCAATCCCAGGGTCGTGTTGCTGCTTCTGAAGAACAAATCC
AGAAACTCGTTGCCATGGGCTTTGAAAGGACACAAGTGGAGGTTGCACTTGCTGCTGCAGATGACGATCTAAACGTAGCTGTGGAG
ATCTTAATGAGCCAACAGGGCTAACACATACCAAATTGCAAAGTATTGCATTGGAGTGTACTGTAACGTTCGTCTCTCATTCCATG
TTTTACTTGCATTTAGAAACTGTATAGCGCTCCTGTTTAACCAGATAATCAAACCGGTTTTCCGGTTTAGATTCTATACAAACGAA
TGGTTGGATTGAGTTTCGCTTTTGTTGCAATGCTACCTCACTTATTTGCAGAAAACTTAAAATGAATTAGTTCGGCTTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567064 rhomboid-like protein 15 [Arabidopsis thaliana] | 1885 | 1e-208 |
| AAM65024 unknown [Arabidopsis thaliana] | 1867 | 1e-206 |
| XP_002878222 rhomboid family protein [Arabidopsis lyrata subsp. lyrata] | 1861 | 7e-206 |
| NP_001190126 rhomboid-like protein 15 [Arabidopsis thaliana] | 1830 | 3e-202 |
| BAH57020 AT3G58460 [Arabidopsis thaliana] | 1684 | 2e-185 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LB17 Uncharacterized protein At3g58460 | 1885 | 5e-210 |
| Q8RXW0 Uncharacterized protein At3g17611 | 211 | 7e-016 |
| Q6NTF9 Rhomboid domain-containing protein 2 | 164 | 2e-010 |
| Q8VEK2 Rhomboid domain-containing protein 2 | 155 | 2e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z2U1 AT3G58460 protein | 1684 | 2e-185 |
| B9H9X7 Predicted protein | 1490 | 5e-163 |
| B9T029 Rhomboid protein, putative | 1342 | 8e-146 |
| B6TE56 Rhomboid family protein | 1166 | 2e-125 |
| C0HEG2 Putative uncharacterized protein | 1165 | 3e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58460.1 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) | 1886 | 3e-211 |
| AT3G17611.1 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding | 211 | 6e-017 |
| AT3G59520.1 ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) | 198 | 2e-015 |
| AT3G17611.2 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding | 161 | 4e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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