Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN08988

FASTA Sequence
Unigene ID: UN08988Length: 739 SSR 
GGGCGTCCGTCTACTTCTCTTTTAATTTTATCCGGTCCGGATCTCTCTCTCTCTCTCCGACACAGACACTCTCTCTCTACATCTCT
TCTTGCAAGACACTGGTGACTGTTTTTTAGGCGGGGAAAATGTCTGGAAAAGGGGCGAAAGGGCCGATAATGGGGAAATTCATCGA
CAAGGACAAAGACAAGAAGAAACCCACTACTCGCTCTTCTCGTGCTGGTCTTCAGTTTCCAGTTGGGAGAGTCCACAGACTGTTGA
AAGGAAGGTCAACCGCTCACGGACGCGTCGGCGCGACCGCCGCGGTTTACACGGCCGCTATTTTGGAGTATCTGACCGCCGAAGTC
TTGGAGCTCGCTGGTAACGCGAGCAAGGATCTTAAAGTGAAGCGTATCACACCCAGGCATCTTCAGCTCGCTATTCGCGGTGACGA
AGAGCTCGATACTCTCATCAAAGGAACTATCGCTGGTGGCGGTGTCATTCCTCACATTCACAAGTCTCTCATCAACAAATCTGGCC
AAGAATAGCTCCTTTATCTCTATTTCATCATCTCTGTCTTTTTTGGACCTTTTATTTTGTTAAATAGTCGTCTATGTTTTAAGGTA
CAAGTGGAGATTCTGTTTGTTTGTTTAAGACTCAAGTGTGACTTGTTTCTCTAGTTTCTGAGTAGTGTGTTTTGGTGTTTGATCAT
GTGGAAACAGCTGCATAAGATATGACAAATATAAGAAGAGACTTGACTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002885097 hypothetical protein ARALYDRAFT_341690 [Arabidopsis lyrata subsp. lyrata]6221e-062
NP_175683 histone H2A protein 9 [Arabidopsis thaliana]5995e-060
XP_002529367 histone h2a, putative [Ricinus communis]5843e-058
XP_002284738 PREDICTED: hypothetical protein [Vitis vinifera]5816e-058
XP_002324843 histone 2 [Populus trichocarpa]5791e-057

Swiss-Prot top hits (Blast detail)Scoree value
Q9C944 Probable histone H2A variant 35992e-061
O23628 Histone H2A variant 15519e-056
Q8H7Y8 Probable histone H2A variant 15472e-055
Q8S857 Probable histone H2A variant 25411e-054
Q84MP7 Probable histone H2A variant 35348e-054

TrEMBL top hits (Blast detail)Scoree value
B9STP8 Histone H2A5842e-058
B9IKT5 Histone H2A5797e-058
A9PIK3 Histone H2A5771e-057
C6SZ77 Histone H2A5771e-057
A5AKG7 Histone H2A5762e-057

Arabidopsis top hits (Blast detail)Scoree value
AT1G52740.1 HTA9 (HISTONE H2A PROTEIN 9); DNA binding6002e-062
AT3G54560.1 HTA11; DNA binding5526e-057
AT2G38810.1 HTA8 (HISTONE H2A 8); DNA binding5185e-053
AT2G38810.3 HTA8 (HISTONE H2A 8); DNA binding5185e-053
AT2G38810.2 HTA8 (HISTONE H2A 8); DNA binding5185e-053

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  100%

Unigene MembersMember information