Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN09002

FASTA Sequence
Unigene ID: UN09002Length: 991 SSR 
AGTCACTTAGAAATCAATTACTAATGTTAAATTCTAATAAGAATCTCTTGATGGAAAACATATTTAAAAGGTCCAAAAGCACAGAT
TTATTTTTAATATGTTTTGCAATAGCAACTATAGCTAAAACTGATGATGGTTATCATTTTTCAATGGTAGCCAATCTAAATTCAAG
AAAGAAGCAAAAAGAAAAACGCACCCGACCAAACATCAAAAGGACACAAGCTTGTCGGCGAAAAGGACCAAGCAACCATTGTACTT
GAAAATATCTCAGATCTATGAAATCTGACCGCAGTCGGCGATCACCACGGGCCAGGAAAGCTTGTCCCTAACAGATATCTTTGAAA
TGGTCCTGACCACATCCAATCCTTCAACAACTTGGCCGAACACGACGTGTTCATCGTCGAGTTCCGGGCACTCCGTCAAGCAGATC
ATAAAGTTAGATTCGTTGGTGTCAGGACCACGGTTGTTCATGGAGATCATACCCGGACATGTGTGCTTTTTGATGAAGTTCTCATC
CTCGAAAAACCCACTGTCGTAGATTGATTCGCCTCCGCATCCTTTCCCTTCGTTAGTGAAATCTCCTCCTTCAATCATATAATCGG
CGCACCTATGGTAGATGACTGATCCTTTGTAATGGAGGGGCTTACCCTTCTTCCCCATGCCTTTCGTCGCCTGTACAGAGGGCGCG
GAAATTCTCTGCCGTCCGTGGGGTCGTGTCGGCAAAGAGCTCCATCACGATCCGACCAATAGGTTTACCGCAAGCAGCTGGAGGTT
GAATTCGGCCAAAGGCAGCCCCTACCTCGGCTCCCCCTGGAGCAGAGTTTGGGTTAATGTTAATGGTAAATCCTTCACCCGCCGGA
ATGTTTATGTTGATGGTAAATCCACCAGCCATTCTCTGAGATGGATCTAAGAAATTATAGGTTTCCTGGGAGGAGCTATCGAGAGA
GAGAGAACATATAGTTCCAATGAAAATAAAATGAAGGAAGATCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883469 hypothetical protein ARALYDRAFT_898931 [Arabidopsis lyrata subsp. lyrata]3945e-036
CAA69622 cyclophylin [Digitalis lanata]3793e-034
CAA69598 cyclophilin [Digitalis lanata]3775e-034
CAA52414 cyclophilin [Phaseolus vulgaris]3766e-034
XP_002883526 hypothetical protein ARALYDRAFT_899034 [Arabidopsis lyrata subsp. lyrata]3758e-034

Swiss-Prot top hits (Blast detail)Scoree value
Q38900 Peptidyl-prolyl cis-trans isomerase CYP19-13754e-035
Q9SKQ0 Peptidyl-prolyl cis-trans isomerase CYP19-23664e-034
P34790 Peptidyl-prolyl cis-trans isomerase CYP18-33611e-033
P21569 Peptidyl-prolyl cis-trans isomerase3602e-033
Q8W171 Peptidyl-prolyl cis-trans isomerase 13593e-033

TrEMBL top hits (Blast detail)Scoree value
D3VMM4 Peptidyl-prolyl cis-trans isomerase3836e-035
Q8W435 Peptidyl-prolyl cis-trans isomerase3828e-035
A9P8B6 Peptidyl-prolyl cis-trans isomerase3792e-034
Q96416 Peptidyl-prolyl cis-trans isomerase3792e-034
A1ECK2 Peptidyl-prolyl cis-trans isomerase3773e-034

Arabidopsis top hits (Blast detail)Scoree value
AT2G16600.1 ROC3; peptidyl-prolyl cis-trans isomerase3762e-036
AT2G21130.1 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase3663e-035
AT4G38740.1 ROC1 (ROTAMASE CYP 1); peptidyl-prolyl cis-trans isomerase3621e-034
AT4G34870.1 ROC5 (ROTAMASE CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase3557e-034
AT3G56070.1 ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase3144e-029

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  75%
 
121  25%

Unigene MembersMember information