 |
Information for unigene UN09004
| FASTA Sequence |
| Unigene ID: UN09004 | Length: 577 |
SSR | | GGACCTATTAAAAAGGAAAGCGTGAAGTGAAGCAGTAAAACCTAAAACTCCCAAGCGAGAAAAAATATATAGAGAGAGAGAGAGAA
ACAAAGTTTAGAGGTTTAAGTGCTTAGCTCAAGATGATCATCCCTGTTCGCTGCTTTACCTGTGGAAAAGTGATTGGAAACAAGTG
GGATGCGTATCTTGATCTTCTCCAGCTTGACTACACTGAAGGGGATGCACTTGATGCGCTCAACTTGGTTAGATACTGCTGCAGGC
GTATGCTTATGACTCACGTTGATCTTATCGAGAAGCTTCTCAACTACAACACTCTGGAAAAATCCGACAACAGTTGATAAAGAGTG
GATGCAAATCTGTTGAAAGAGTGTTGTTACTCGTCAGACGGCTTATATATTTATGAAATATGTATGAAACTCTAGTGTGTTTGGTG
TAGAAACTTAATCAATCTGAATCATGTTGGTTTTAGACTACGTCAGGGATTTTATCATATGTATGTCGGTGTCTCTACGTGTTATG
CTTTTCTGAGCTGAAAGATTTGTACTTCTAAGTAATTCGTCTTTCACCAGTTCGTATACCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| Q39290 RecName: Full=DNA-directed RNA polymerases I, II, and III subunit RPABC5; Short=RNA polymerases I, II, and III subunit ABC5; AltName: Full=ABC10; AltName: Full=DNA-directed RNA polymerase III subunit L; AltName: Full=RPB10 homolog | 381 | 5e-035 |
| NP_849640 DNA-directed RNA Polymerase II subunit L [Arabidopsis thaliana] | 370 | 1e-033 |
| XP_002326311 predicted protein [Populus trichocarpa] | 356 | 4e-032 |
| XP_002263065 PREDICTED: hypothetical protein [Vitis vinifera] | 356 | 4e-032 |
| BAJ94836 predicted protein [Hordeum vulgare subsp. vulgare] | 351 | 2e-031 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 381 | 3e-036 |
| Q9SYA6 DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 344 | 5e-032 |
| Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5 | 313 | 2e-028 |
| Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 305 | 2e-027 |
| Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 305 | 2e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LFJ6 At1g11475 | 370 | 7e-034 |
| A9PF10 Predicted protein | 356 | 3e-032 |
| A9NJU8 Putative uncharacterized protein | 350 | 1e-031 |
| C6T2Z9 Putative uncharacterized protein | 350 | 1e-031 |
| Q1EP53 DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative | 350 | 1e-031 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G11475.1 NRPB10; DNA binding / DNA-directed RNA polymerase | 371 | 4e-036 |
| AT1G61700.1 DNA-directed RNA polymerase II, putative (RPB10) | 344 | 5e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
