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Information for unigene UN09062

FASTA Sequence
Unigene ID: UN09062Length: 860 SSR 
GCCGATCGTCTTTACCTTTTGATCCTTCTTCTTCTTCTCCGCTAGGTTTCTCTCAAACGAACAGATCTTCCATTCGTCTAAAAGTT
ACCTTGTGCGATGAAGACAGCTAAGGGGAAAGGTAAAGCTAAGACCACTAAGGAAGCCTTGAAGCCAGTTGATGACAGAAAGGTGG
GGAAGAGGAAGGCACCGGCTGAGAAGCCTAGCAAGAGGGAGACTCGTAAAGAGAAGAAAGCCAAGAAGGACCCTAACAAACCCAAG
AGAGCTCCTAGTGCCTTCTTTGTCTTCTTAGAAGATTTTAGGCAAACGTTCAAGAAAGAGAATCCAGATGTGAAGGCTGTCTCTGC
TGTTGGGAAAGCAGGAGGACAGAAATGGAAGTCAATGTCTCAGGCTGAAAAAGCTCCGTATGAAGAAAAAGCTGCAAAGAGGAAAG
CTGAATACGAAAAGCTTATGGATGCATACAACAAAAGCATGGAGGAAGGGAGTGATGAATCTGAAAATTCTTTATCAGAAGTGAAT
GATGAAGATGAAGCTAGTGAAGAGGAAGAGAAGGTAGAGAAGGGAAAGGCAGGTGAGGATGACGAAGATGATGATGATGATGATGA
AGATGACGATGATGAAGATGACGAGGACGAGGAAGAAGACTAAACTGGAGATAGAGATCAGAGTTTGGATCTCGAGGATAACTACA
GGTTCAGAAGGCAGAAGTAAGTATATTTTGTATTTTGTGTGTTGACAACTATAGATCGAAATGGTGTGTTGTGCTTCTTTTTTTCT
TTTCTTTTCCTAAGAAAGCCAAACAGTTCTTAGCGGTTCATGTAAGTTTATTTCAGCTTTCTATCCACAACGTGCACTGTACCAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33790 unnamed protein product [Thellungiella halophila]8211e-085
NP_190756 high mobility group protein B1 [Arabidopsis thaliana]7969e-083
NP_974413 high mobility group protein B1 [Arabidopsis thaliana]7781e-080
XP_002877829 hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp. lyrata]7502e-077
NP_001190062 high mobility group protein B1 [Arabidopsis thaliana]7109e-073

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein3672e-034
P40619 HMG1/2-like protein3663e-034
P40621 HMG1/2-like protein3602e-033
P27347 DNA-binding protein MNB1B3564e-033
P40620 HMG1/2-like protein3531e-032

TrEMBL top hits (Blast detail)Scoree value
O49595 At3g51880/ORF137967e-083
Q3EAL6 AT3G51880 protein7788e-081
C6SVP1 Putative uncharacterized protein5791e-057
C6SXC8 Putative uncharacterized protein5781e-057
A5BH86 Putative uncharacterized protein5718e-057

Arabidopsis top hits (Blast detail)Scoree value
AT3G51880.1 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7964e-085
AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7964e-085
AT3G51880.2 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7785e-083
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3799e-037
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3781e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
125  50%
 
101  10%
 
64  40%

Unigene MembersMember information