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Information for unigene UN09104
| FASTA Sequence |
| Unigene ID: UN09104 | Length: 618 |
SSR | | GGGTCCCTTCGATTTGCTTCGCCCTACGTTTCTGTTTCGGTTTCTCTTTCTCTTCCTGTCCGTTCAGATCTTCGTCTCCCGATTTG
TGGAATTTCTGTCAAAGGGTCTGCTCTAACATGTCAGGAAGAAAGGAAACAGTGTTAGATTTGGCTAAGTTTGTGGATAAAGGTGT
GCAAGTTAAGCTCACCGGTGGTAGACAAGTCACTGGAACTCTCAAGGGCTATGATCAGTTGCTCAACCTTGTTCTGGACGGAGCAG
TTGAGTCTGTGCGAGATCATGATGATCCTTTGAAGACTACCGATCAAACAAGACCTCTTGGTTTAATTGTTTGTCGTGGAACTGCG
GTGATGCTTGTCTCACCAACGGATGGCACTGAAGAAATCGCTAACCCGTTTGTTCAACCAGAAGCTGTCTAAAGTGTTTCTTTCAA
TACAGAATCTCTCTCTCTCATTTATGTTTTTTAAGTTGGGGGTTTTAGAGAGTATTATGTATCTAAGTATCTGCCGTGGACGCTGG
AAACAATTATTTCTATGTGCTCAGGTCCGACTCTGCCTAACAATTAGAGTGTGATTTGAACTGTTTCTGAGTTTATCATTGAACAA
AATTTAAGTTGGTATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875234 hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp. lyrata] | 471 | 2e-045 |
| NP_178480 U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] | 465 | 1e-044 |
| XP_002299952 predicted protein [Populus trichocarpa] | 452 | 4e-043 |
| ACU14702 unknown [Glycine max] | 449 | 8e-043 |
| XP_002263488 PREDICTED: hypothetical protein isoform 3 [Vitis vinifera] | 445 | 2e-042 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9UK45 U6 snRNA-associated Sm-like protein LSm7 | 305 | 2e-027 |
| Q9CQQ8 U6 snRNA-associated Sm-like protein LSm7 | 304 | 3e-027 |
| Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm7 | 287 | 2e-025 |
| O74499 U6 snRNA-associated Sm-like protein LSm7 | 269 | 3e-023 |
| P53905 U6 snRNA-associated Sm-like protein LSm7 | 194 | 2e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SI54 At2g03870 | 465 | 8e-045 |
| A9PBG1 Predicted protein | 452 | 3e-043 |
| C6SZM9 Putative uncharacterized protein | 449 | 6e-043 |
| B9RHF7 Putative uncharacterized protein | 443 | 3e-042 |
| D5AC71 Putative uncharacterized protein | 435 | 2e-041 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G03870.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 466 | 4e-047 |
| AT2G03870.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 466 | 4e-047 |
| AT2G23930.1 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) | 128 | 7e-008 |
| AT2G23930.2 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) | 111 | 6e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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