RadishBase

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Information for unigene UN09186

FASTA Sequence

Unigene ID: UN09186	Length: 1320	SSR
ATTCAACGTAAAAGCATTTGTATTGAAGTAGAATGGATTTGCTACCATTCAATTATGCAAAACAAATACCAGATCGAACACTGGAA TGCAAAAAGAGAAGGTCATTTTCATGAAGTTTCAATTTCAGCAAAATAAAAAAAAAAAAAGTATTGGAAAGCTATCGACATAACAA TCAATGTGGACCATTAGATCAGAACATGGTTGATGAATCGGAGGGTGAAGAATCAACCAAGTTGAGAATGCTATTCCAGTAGTTCT TGTTGTCCTCATAGTAGCTATACTCACTCTCGTTGACTGCGACGGCTCCGGCGTCCGCCTCGTCGTTTTTAACGGTGGAGAGACTC CGATCAGCTGAATCACCGAGCAGAAGGCTGGTGAGTCCTTCTGTCGGACAGTTGATCTGCCTCATCCAGTCGTGGTCGGAATCTTT GACATCGGAGGAGGTGGAAGAAGTCACGGCGAATTCGTTCATGTTCGGAACGTTGTTATTCTCTCCCGAAGGCATGATCGTCAGAT GGTGATTCTCGGAGAATGTCACCGTCGATGTCGGTGATTCAAGCTGTTGATCTCCGTTTCCTTTGTTTGGTTTTGTCCAATTTGCT GATGCCTTGTGAGCCAAGCAATGATTAGGAGCTGCTGCTTTCTTGTTTTGGTAATGCTGTAAGTGGAGAAGCTTTGATTCTCTAGC TAGCCTTGCTTCAGTTTCGAGCCGAGCACTCTCCCATTGAGCCATGTGGCTAAGCGTGGCTGCTGCGCTCTTGGACTGACCTGTGG AAGACATTAGAGTCTCGTTTTTGTGCTTGTGTGTCACTGGATCTATCCCCATTTTAACCAGACGTTTCTTCAAGCGTGTGTTCCAG TAGTTCTTGATCTCGTTGTCTGTCCTTTTTGCTAAGTGAGTTGCAATCGCTGACCATCTGTTTCCGAGGAGAGCGTGGAGTTGAAT GATGGTTTGTTCTTCTTGTACAGTGAATTTGCCTCTCTTGATGTCAGGTCTTAGGTAATTAGTCCATCTGAGTCTGCAACTCTTTC CACATCTTTGGAGACCAGCTTTCTCAGGCAAAGAGCGCCAGCTTCCATGACCATGCTCTTCAATGTAAGCCAAAAGTTTCTGATCC TCTTCTGGTGTCCATGGCCCTTTCTTTAACCCAGCCTTATCACAGCACGGCGATCTTCCCATTACAAAACTTAGGCTAAAGCTACT GAAGAGAGAAGGCTTTTTTTTTAATCTTATTAAATATCTTCAACGTGATTTATGGTGTAGTGTAGTGTATGAGGTGGTAGTAGTAG TCATTAGATGATGATGATGATTGTCCACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAF26160 putative Myb-related transcription factor [Arabidopsis thaliana]	1111	5e-119
NP_186763 myb domain protein 106 [Arabidopsis thaliana]	1103	5e-118
AAS10051 MYB transcription factor [Arabidopsis thaliana]	1101	8e-118
XP_002882197 hypothetical protein ARALYDRAFT_477416 [Arabidopsis lyrata subsp. lyrata]	1077	5e-115
NP_197035 myb domain protein 16 [Arabidopsis thaliana]	1031	1e-109

Swiss-Prot top hits (Blast detail)	Score	e value
Q8GWP0 Transcription factor MYB39	545	1e-054
O49608 Transcription factor MYB32	527	1e-052
Q9S9K9 Transcription factor MYB3	515	3e-051
P81395 Myb-related protein 330	507	3e-050
Q38851 Transcription repressor MYB6	507	3e-050

TrEMBL top hits (Blast detail)	Score	e value
Q9LE63 Putative Myb-related transcription factor	1111	4e-119
Q6R098 MYB transcription factor	1101	5e-118
Q9LXF1 At5g15310	1031	7e-110
A2XU96 Putative uncharacterized protein	858	8e-090
Q01II6 H0219H12.11 protein	858	8e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01140.1 MYB106 (myb domain protein 106); DNA binding / transcription factor	1103	2e-120
AT5G15310.1 ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor	1031	4e-112
AT5G15310.2 ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor	899	8e-097
AT3G61250.1 AtMYB17 (myb domain protein 17); DNA binding / transcription factor	634	4e-066
AT1G34670.1 AtMYB93 (myb domain protein 93); DNA binding / transcription factor	609	3e-063

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			50%


8	2			50%

Unigene Members	Member information