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Information for unigene UN09188
| FASTA Sequence |
| Unigene ID: UN09188 | Length: 927 |
| SNP | GGTAACCTCATTAGATGCCAAAAACTTCCACTTCAACGTTATCAGCGGCAAGAACATGACATTTGATAACATCAAGATCATTGCCC
CAGCTGAAAGCCCCAACACTGATGGTATTCATTTGGGAAGATGTGAGGGAGTCAAGATCCTCAACACTAAGATCGCCACAGGAGAT
GACTGCATCTCCGTGGGAGATGGGATGAAGAATCTCCTCATTGAGAAAGTTGTGTGCGGTCCAGGACATGGAATCAGTGTTGGAAG
CCTTGGAAGGTACGGATGGGAGCAAGATGTAAATGACATTAAGGTTATGAACTGCACCCTCCAGGGAACCGATAACGGTCTGAGGA
TCAAGACATGGCCCTCTGCGGCTTGCGCCACAACCGCTGCCGGTATTCATTTTGAGGATATCATCCTTAACAACGTTAGCAACCCA
ATCCTCATTGACCAGGAGTACTGCCCTTGGAACCAATGCAACAAGAACAAACCATCAACAATTAAGCTGGTGGACATTGCCTTCAG
GAATATTAGAGGAACATCAGGGAACAAGGACGCAGTGAAGCTATTGTGCAGCAAGGGACATCCATGTGAGAATGTTGAGATTGGAG
ACATTAACATTGAGTACAAAGGACCTGATGGTCCACCCACTTTCGAGTGCACAAACGTCACACCTAAGCTTGTGGGAACCCAGAAC
CCAAAGGCTTGCGTTGGACCTGTCGTCAAGGCACCTGGGCAAGCGTAAAGTGTTGAAGCTCAGATCAACACACTAGGGCTTTCACA
TCCAATTTTGTTTTTCCTTTTCTCTAACCCTTTTTCAAGTCGCATATGGGTGAGTTTTAGAAAACTGTAACAAAAAAAAAGTATAT
TCGATGCCAACACATATGTGTGGGTGCATAATGATGCAATTAATAAAACTAAATTATATGTTCTGCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAP42648 polygalacturonase [Brassica napus] | 1281 | 6e-139 |
| AAM74219 putative pollen polygalacturonase [Brassica oleracea] | 1273 | 5e-138 |
| P35337 RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor | 1253 | 1e-135 |
| NP_187441 polygalacturonase-like protein [Arabidopsis thaliana] | 1105 | 2e-118 |
| ABE65925 polygalacturonase/pectinase [Arabidopsis thaliana] | 1105 | 2e-118 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P35337 Polygalacturonase | 1253 | 5e-137 |
| Q39766 Polygalacturonase | 746 | 3e-078 |
| Q39786 Polygalacturonase | 740 | 1e-077 |
| P24548 Exopolygalacturonase (Fragment) | 730 | 2e-076 |
| Q40312 Polygalacturonase | 715 | 1e-074 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7Y1T6 Polygalacturonase | 1281 | 4e-139 |
| Q8LK84 Putative pollen polygalacturonase | 1273 | 4e-138 |
| Q1PES3 Polygalacturonase/pectinase | 1105 | 1e-118 |
| Q9SFD0 Putative polygalacturonase | 1105 | 1e-118 |
| Q9LUB8 At5g48140 | 1043 | 2e-111 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07840.1 polygalacturonase, putative / pectinase, putative | 1105 | 6e-121 |
| AT5G48140.1 polygalacturonase, putative / pectinase, putative | 1043 | 1e-113 |
| AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase | 1033 | 1e-112 |
| AT3G07830.1 polygalacturonase, putative / pectinase, putative | 1030 | 3e-112 |
| AT3G14040.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 684 | 4e-072 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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