RadishBase

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Information for unigene UN09205

FASTA Sequence

Unigene ID: UN09205	Length: 1100	SSR
AACAAAAGTTGGCAATATTAATTAGATTCATATGTCAATACATAAATTTGAAATAGAAAGATTAGACTACATAGCAAAGAGTACAA CACACTGTTAACTCAAAACGAAAGAGCAAAAGACACAACAACAACAACACAGCTTGTTTTAAGCAAAACTATACAAAAAGCTACTC GAAATGTTCTCCCTTCTCAATGATATCGGAATTGTTACTTAATAAAATGGGGACGAATCAAATAGTTGAAATCATCATTCTTCTCC TTCTTCTTTTAAGTTGGTTACCTAGTAGTCTTTAGAGATTTTTTAAAAAAAATCACAAGAAGGCGCAACGGTTCTTGTTCTTTTTC TTCTTCCTCTGCTTTGGTGGCTGAAGCACCACTTTGATGGCTGCATCAAACACTGCCTTCACATTCTGCTGTGTCTTTGAACTACA TTCAATGTAGACCGCAGAGCCGATCAGTTTCTTTAGCTCCTCTCCCTGGTTTGTAGTAATGGGTACTGCACCAGGATGATCTATGA AGAATTGCTTGTCATCTCGAAGGTCAAGTTTTGTTCCAACGAGGATAATGGGAACACCAGGGGCATAATGCCTGAGCTCAGGAATC CACTTTTTGGCGATATTCTCATAGCTAGCCTTGCTGATGAGGGAGAAGGCAAGAATGAAAACATCAGCGCCACGGTAACTCAGAGG TCGTAACCTGTTGTAGTCTTCTTGACCGGCTGTGCCCCACAAGCCAAGATTGACGGTGTTCCCATCAACAACCACATTAGCACTAA AGTTGTCAAAAACTGTTGGCACATAGTCAGTGGGGAAAGTGTTGCTAGTGTAAGAGATCAGCATGCAGGTTTTTCCGACAGCACCA TCACCGACGGTAACACACTTTATGAACCTTGACGCGCTCATCTTTTCTGCTAGATCGAAAAAAAGCCCCCTTCCTTACTTGTGTGT TTTGTGCTTTTCTTCGAACTCCCAAGCTTTGTGAATCTCAGAAGCACCACAAAAAGTTGCAGAAGACGGGACAAAATTTAAAAAAA ATGGATGAGAGAGAAAGAAAGATTGGTGATGACTTTGATGAAGACTCAAGACAGAGTCGTTACATTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002890370 hypothetical protein ARALYDRAFT_472235 [Arabidopsis lyrata subsp. lyrata]	1007	5e-107
NP_173437 Rac-like GTP-binding protein ARAC4 [Arabidopsis thaliana]	1001	2e-106
NP_177712 Rac-like GTP-binding protein ARAC5 [Arabidopsis thaliana]	999	4e-106
AAC78242 Rho-like GTP binding protein [Arabidopsis thaliana]	990	5e-105
AAD00114 ATGP3 [Arabidopsis thaliana]	953	9e-101

Swiss-Prot top hits (Blast detail)	Score	e value
Q38919 Rac-like GTP-binding protein ARAC4	1001	1e-107
Q38937 Rac-like GTP-binding protein ARAC5	999	2e-107
Q6EP31 Rac-like GTP-binding protein 5	936	4e-100
Q38912 Rac-like GTP-binding protein ARAC3	919	3e-098
O04369 Rac-like GTP-binding protein RAC1	918	4e-098

TrEMBL top hits (Blast detail)	Score	e value
Q0WU07 RAC-like GTP-binding protein ARAC4	1001	2e-106
B9GQS4 Predicted protein	944	7e-100
B5U2V7 Rac-like small GTP-binding protein	940	2e-099
A5CAU5 Putative uncharacterized protein	938	3e-099
A5HIF5 Rop	937	4e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT1G20090.1 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding	1002	7e-109
AT1G75840.1 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase	1000	1e-108
AT4G35020.1 ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase	920	2e-099
AT2G17800.1 ARAC1; GTP binding	912	2e-098
AT2G17800.2 ARAC1; GTP binding	912	2e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	4			67%


6	2			33%

Unigene Members	Member information