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Information for unigene UN09216
| FASTA Sequence |
| Unigene ID: UN09216 | Length: 1407 |
| SNP | GGCCCACAGGAAAAAACTAGACAAAGTGGCCATACAAAAAATGCTCGTTGTTTAACAATTTTTGACAAAGATTAAAAGTGTCAGTA
AAAGCTTACAGAAAACATAAAAGAAACACCATGAAACAATACACAAGATATATAGGCTGCTAAAACAACCTTCACCGTAAAAATTT
ATCAGCTAAAAGTTTTTTTTTCCCTTTTCTTCCATCTTCGTCTGCTTTCTTTCGTTGACAAATGGCTTTAAATAAAAACAAAAGAA
ACAACAACACAGATCTCATGTTACATGAGTCTGAGTTCGTACTCACCAGCCATGGTTATATATCTCACCCATGGAAGAGCTTGGTA
CCCACTCTTCTCTATCACCTTCAGGTACCGAACCTGTATTCCTGAAACAGTGAAATATGGGATCTCGAATTTGACTCGGATGGGAG
CTTTTCGCTCAGGCGTGGCTTCCTCTGCGGTTATACTTGGGAGATGGAACTCTGCTCTCAACATATACTCCTTGTTCCCAGGGAAA
GATTTGATTTTCCAAACCAATGCATCTTTTTCAGGAGCATATGCGGCAGACCCGAGAGATGTTCTTACGGTGGGGTTGGATGCATC
GGTTGGTACAGGCAACTCGATCTCAACATTCGTTGCAGTGCTTCTTTCCTTGAACTGGCTTCTAGCTTTTACAAGCATCTCAACAC
GACTCCTGGAATGCCTCTCTATCTGAGCTTCGACCCATATAAGAGGCTTTACCTGGGTACTGAGTCTATATGTCATCAAATCAAAA
GCCCCATCAGGTGGTATGAAGGATATCGTCCTATCGTTCTCAAAACGAGCCAATCGAACACACTGATGAAATTTGATGTCCTCCAA
GTCAATAGCTTTTCCTTTTGTTGCTCTCCCCTGTGCTTCCAACAGTACTCTATCATTCAGACCTAGCTTACACTCTGGCATTCCAC
TCAAATATGTTCGCATCTTCAATGCTCCAACGACATCAGACCTCACAATTTGCCCATTACTGTTGACGAGGATATTTACACTCTCA
ACCACGTCCAAGAAAACTTCGTTTTTCTTAAACTGTAACCCCTCACTCCTCCAAGAAACAGCATTAGTGACAGCCATTGGAGGTCT
CTGTGTAACTTCCATCCTATAAGCATCAGTCTTGATGAACTCACTAAGGATTCTTGCTTCGGTATACTGAGGGTAACCAAAGTCCA
TCATCTCATCAAGTAACTCATACACAACCACAAAGTTATCCCTCAATGATTCTTCCTCCAACGCCTCAAAGTAATGCTTGAAGACA
TCGACAACGCGATGCAAGAAGAAGAGAAGACTGGCAGCATTACAGTTCTGCCTAGAAGCTATCATGAGGTAAACGTTACATGCTGT
ACAAACATGTATGTCACTCCATTATCGTATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889832 clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] | 1834 | 9e-203 |
| NP_176277 AP-1 complex subunit mu [Arabidopsis thaliana] | 1818 | 6e-201 |
| XP_002886592 clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] | 1818 | 6e-201 |
| XP_002511345 clathrin coat assembly protein ap-1, putative [Ricinus communis] | 1748 | 8e-193 |
| XP_002314604 predicted protein [Populus trichocarpa] | 1741 | 5e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P35602 AP-1 complex subunit mu-1-I | 1276 | 2e-139 |
| Q2KJ81 AP-1 complex subunit mu-1 | 1259 | 2e-137 |
| Q9BXS5 AP-1 complex subunit mu-1 | 1259 | 2e-137 |
| Q32Q06 AP-1 complex subunit mu-1 | 1257 | 3e-137 |
| P35585 AP-1 complex subunit mu-1 | 1256 | 4e-137 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22715 Clathrin adaptor medium chain protein MU1B, putative | 1818 | 4e-201 |
| B9RAX0 Clathrin coat assembly protein ap-1, putative | 1748 | 6e-193 |
| B9HTU8 Predicted protein | 1741 | 4e-192 |
| B4FQ20 Putative uncharacterized protein | 1734 | 2e-191 |
| C0PFY3 Putative uncharacterized protein | 1734 | 2e-191 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G60780.1 HAP13 (HAPLESS 13); protein binding | 1819 | 2e-203 |
| AT1G10730.1 clathrin adaptor complexes medium subunit family protein | 1726 | 1e-192 |
| AT5G46630.1 clathrin adaptor complexes medium subunit family protein | 682 | 1e-071 |
| AT5G46630.2 clathrin adaptor complexes medium subunit family protein | 594 | 2e-061 |
| AT4G24550.2 clathrin adaptor complexes medium subunit family protein | 449 | 1e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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