RadishBase

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Information for unigene UN09224

FASTA Sequence

Unigene ID: UN09224	Length: 973	SSR
CATACATAACAAATTTTGATTGATCGGATTATTTATTACATACATACACTTAAATCATAAAACTCGAATTCAAACTTAAAACATTA GTACACTAACTCTCGGTTTTGGTTTTATTCAATACCAACATCAAAATAGGTGTCTAAAGTAATAATACCATAGATCAACCTTATCG TATATATGCACACACTCGTTCCATACAGATATGTCATGATGTATATATATATATATATAAAGTTTCGGTGGTGGTGCATTTGGAAA TTTATATTCCCATATTAATTTATATATTTGGGACAAATGTCAACACCTTTGAGGAAGAGCCCTTTCTTCCAAAGGCCACTCTCATG CTCATACATTGAGAAAGTGATTTCTCCGGCGGAATTTTTCTCCGGCTTGAATTCTCCGACTATAATATCGACCCATTGATACCTTG GTATTTCCCTTTAAACTCACCTTTTGCTCCTGCAGTTTGTGGTTACCGTTAGGCAACACTAGTTTAATGTTCACCGGCGTGTCCCA TCCATAGGCCGGATCCTCTAGTTTCACCTTAAAGACTACCTCGTACGTAATCCCTGGAGTGAGGTTCTTCGTGTCGAATTTTCCCG TGATGTCGAGCCAACACACGTTTTTCAACGCCACAGCTTCTACACCTGCCTCATTTGGTGACTCCTTGTTGAGAAACCAAGTCCAA TAGTTGGGGTCATCCGACCAAGTGATCGAGAGGTTCCTTGGATAGAGCATGAAGTTGCTGTTTTTCTCGTCCAAGATTCTTGGGCT TCAGGACATCAGAACGTAGCTGTGCAGTGGAGGGAGAGATTGGAACCTTGGCGTCTTTGGGATTGGCCTCATAGTTTCGTGGAGTA TCTGATAACTTCGGTTCAGCCCTTTTTACCCTATCCCCATTGTTAAACATCTTCTTCATAAACATCTTCTCCCGATTGAATTTTGT TTTCGAATATGTTACCTAAGTTTACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_193719 protein PHLOEM protein 2-LIKE A1 [Arabidopsis thaliana]	480	5e-046
XP_002869965 hypothetical protein ARALYDRAFT_492886 [Arabidopsis lyrata subsp. lyrata]	476	2e-045
AAM62948 lectin-like protein [Arabidopsis thaliana]	475	2e-045
ABN06032 Galactose-binding like [Medicago truncatula]	317	4e-027
BAB08190 unnamed protein product [Oryza sativa Japonica Group]	307	6e-026

Swiss-Prot top hits (Blast detail)	Score	e value
O81865 Protein PHLOEM PROTEIN 2-LIKE A1	480	2e-047
Q9C8U9 Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4	290	2e-025
Q9C5Q9 Protein PHLOEM PROTEIN 2-LIKE A5	253	5e-021
Q9FHE5 Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7	242	9e-020
Q9FHE8 Protein PHLOEM PROTEIN 2-LIKE A6	230	2e-018

TrEMBL top hits (Blast detail)	Score	e value
A2Q295 Galactose-binding like	317	3e-027
Q5ZEM1 Os01g0158400 protein	307	4e-026
Q7F808 Putative uncharacterized protein	307	4e-026
A2WKX6 Putative uncharacterized protein	303	1e-025
B9NA66 Predicted protein	291	3e-024

Arabidopsis top hits (Blast detail)	Score	e value
AT4G19840.1 ATPP2-A1; carbohydrate binding	480	2e-048
AT1G33920.1 ATPP2-A4 (Phloem protein 2-A4); carbohydrate binding	290	2e-026
AT1G65390.1 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5); carbohydrate binding	253	4e-022
AT4G19850.2 ATPP2-A2; carbohydrate binding	245	4e-021
AT5G45090.1 AtPP2-A7 (Phloem protein 2-A7); carbohydrate binding	242	8e-021

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			25%


12	3			75%

Unigene Members	Member information