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Information for unigene UN09241
| FASTA Sequence |
| Unigene ID: UN09241 | Length: 1036 |
| SNP | GGTAACAATCTTATATCATTTGCTTTCCAAAAAAAAATCTTACATCATTTTAACATCAAACAACCCCATATTCACATGTGATCAGT
TGAAACACATTGTTTCTCAATCATTTTCCTGGAACATGTTTTCTTCTTGCCTTTAGATTTCTTATTCATTACATAAAACAACAACA
ACAATAACAACGTGGAAGAACACACATCAATATTAAATTATGAAGATAGTTAAGCTACTGATGGAGAAGGAATCATTCCCACCTTC
CTCGCATAAGCAAAGATACCACCAGCATCAATAACCGGTCCTGCATCACCAATCGCCTTCAGCTTATACTGCTTACCAGTCGTGTG
ATTAGTCAGTAAACCACCACTATCCCTCAGCTCGATCGTCACCGTGTCTCCTGTCGTACACTCGTCGCAGACTCTAACCTCTGATT
CGAGGGGAAACACCTCTCCCGTAGCCACCGAGTTACGGAAAAAGATCCTTGCGTAAGTCTGAGCAACAACGGCTTTAGCTCCGGCT
GCTCCTAGACAGACAGGAGCGTGTTCACGTGACGACCCGCAACCAAAGTTCTCACCGGCGACTATGATCGAGTATTTAGATTTGAT
CTCTCCTGGCTCAACGAAGCGGGGTTTGTGGGAGTCTGGTAGACCGGAGAGGGCGTTAGAGCCGATCTCGTCGCGCTCTTGCTGGT
TGGAAGGGAATATGCATGCTTTGTCTGCTGGGATGATCTGGTCGGTGTCTATGTTGTCTTTCAAGACGAAGCATAGGCCATGGAAG
GTGGTTTTGGCTAGGGAGTCGGATCCCTCTGAGGAGGAGGGAGTGGCACGTGGGATGATGAAGGATGCGCGACGTGAAGAGAGGGA
GATAGATGATGGGAGGAAGTAAGCGGAATTGGTGATCTTGAGGGAAGGAGACCGGAAGGGAACGAAGGAGGGAGAAGTTTTGCTGG
ATGGGGAAGGTAAGACTCTGGAGAATGTAGGTAGAGAAGACGCCATTTGTGTGCGTTTGGCTTCTATTATCGAAGTTGTTGTCTGC
GTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181838 isopropylmalate isomerase 2 [Arabidopsis thaliana] | 1000 | 3e-106 |
| XP_002880024 aconitase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 989 | 5e-105 |
| XP_002880023 aconitase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 809 | 4e-084 |
| NP_181837 Aconitase/3-isopropylmalate dehydratase protein [Arabidopsis thaliana] | 804 | 2e-083 |
| XP_002878250 aconitase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 785 | 2e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| B5YHE5 3-isopropylmalate dehydratase small subunit | 261 | 6e-022 |
| Q9UZ06 3-isopropylmalate dehydratase small subunit 1 | 246 | 3e-020 |
| Q8U2A0 3-isopropylmalate dehydratase small subunit 1 | 237 | 4e-019 |
| Q8TX94 3-isopropylmalate dehydratase small subunit 1 | 234 | 8e-019 |
| Q9WZ25 3-isopropylmalate dehydratase small subunit 2 | 233 | 1e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZW84 3-isopropylmalate dehydratase, small subunit | 1000 | 2e-106 |
| Q9ZW85 3-isopropylmalate dehydratase, small subunit | 804 | 1e-083 |
| Q9LYT7 3-isopropylmalate dehydratase-like protein (Small subunit) | 770 | 9e-080 |
| B9SXE3 3-isopropylmalate dehydratase, putative | 720 | 6e-074 |
| B5LAV2 Putative 3-isopropylmalate dehydrogenase small subunit | 706 | 2e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G43100.1 aconitase C-terminal domain-containing protein | 1000 | 1e-108 |
| AT2G43090.1 aconitase C-terminal domain-containing protein | 804 | 6e-086 |
| AT3G58990.1 aconitase C-terminal domain-containing protein | 770 | 5e-082 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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