 |
Information for unigene UN09282
| FASTA Sequence |
| Unigene ID: UN09282 | Length: 1268 |
SSR | | CCGCTAAATGAATAATATAAAAGTTTAAGAGATACCAAAAATATACTTTATCTACCCAAAGTTAACATTTGGGACGTTCGGAGCTT
GAACATAGAAAATAACAGTATACCAAAGCCAGGATCAAATTCAACTTTCCACACGTAAAAAATGGCCACTATTGTAATGAGTCGAC
TTTTCTTTTCCTTGTAACTTCTTAAGGAGTTTCAAAACTAAATCTTCCTTACAAAAACTATTGAACTTTTGGACTTGCTTGCTGAT
GATGGGTTTTTAGACAATGATGAAGCTTTGAATCCCCCGCTCAACAAACTAAACCCCGACGCTGCACATATTTTCCTTCTCTTTGC
TTCTAGCTCCAACCTTTTCTTGCTTGATGATGATGACATCGAGTAAAATGACTCTGGAAATATGGAAAATGAATGAATCAAAGCTC
GTTTATCCTTTCGATTCTTATCAAACTTGGTCCTGAACTTCACGTTTGATGCAGCTGCAACATCTTCTTCGCTCTTCGGAAAAAGT
CTTATCCCCAACCCTAGTTTCCTTGAAGCAGCCTCTTCTTCAGCTACACGTTTCCTGTGACCCCTAATTTGTGCACGTAGAGCTTT
GTTTAGGGAGTAGTCATCTGCATGTCTTGCATCTGAGACTCGCTGGAGGCGGACCAAAAGCGGTTCTGCTGCTTTCTTCTTCTGCA
AATCAACTTCCTGGTGCTCTAAACGATAAAACGGGTCTGCAAGCTTTCCCTTCTCTTCTTCAGCAGTGAGCTCCATGGTTTCAGCG
TCTTCTACGTCATATTCCTCAACCTTCTTCTGAGCACCACTAGTAATTACATACTCGCAGTTCTGAGGATCTGTCTGAATGACTAT
CTCTTGTTTGCAACATGGTGCTTTCATCGCAAAGCTCCATATCTTTGTAGAATAATAGTTCCCAACTTGCTTCTTCTCAGCATTGA
ATCGAACACCCTTGGCAATCATAGAATTGCAGCCACCACACCATATATTATAGGGCATCTCGAACCTTATGATCAAAATCCCCTCG
CCTAGTTTCCTCGCCCTCTCTCTGAGAGGATGCTGTCCTTGAAACTTGTTCAAGGAACCTTGATCCGGTGTCCATTCTGGTGGGTA
GTAAAAGTTATCTGCCCTGGCAGCTGAAAGAGTCGACATCTTCCTCTTCTTCTTCTTCTTCTATCGAGATTGATCAAATCGTTCTT
TCAATCGCAAAATCTCTTTGGCTCTGCCTTGGCTATGAGTTTGTTGTTTATTGAAGAGCTCTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890680 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1450 | 3e-158 |
| NP_173930 coiled-coil domain-containing protein 130 [Arabidopsis thaliana] | 1408 | 2e-153 |
| XP_002311431 predicted protein [Populus trichocarpa] | 1214 | 6e-131 |
| XP_002315962 predicted protein [Populus trichocarpa] | 1203 | 1e-129 |
| ACJ84963 unknown [Medicago truncatula] | 1190 | 4e-128 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5EA37 Coiled-coil domain-containing protein 130 | 595 | 2e-060 |
| P13994 Coiled-coil domain-containing protein 130 | 592 | 3e-060 |
| Q32PZ9 Coiled-coil domain-containing protein 130 | 578 | 1e-058 |
| Q9D516 Coiled-coil domain-containing protein 130 | 576 | 2e-058 |
| Q6DJK9 Coiled-coil domain-containing protein 130 | 568 | 2e-057 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C609 At1g25682 | 1408 | 1e-153 |
| B9HIY1 Predicted protein | 1214 | 4e-131 |
| B9HWM4 Predicted protein | 1203 | 8e-130 |
| B7FJN4 Putative uncharacterized protein | 1190 | 2e-128 |
| B9SEI0 Coiled-coil domain-containing protein, putative | 1170 | 5e-126 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G25682.1 cell cycle control protein-related | 1421 | 2e-157 |
| AT1G25988.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT1G25682.1); Has 129 Blast hits to 129 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 7; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 380 | 1e-036 |
| AT1G17130.1 cell cycle control protein-related | 197 | 2e-015 |
| AT1G17130.2 cell cycle control protein-related | 137 | 2e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
