RadishBase

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Information for unigene UN09292

FASTA Sequence

Unigene ID: UN09292	Length: 1503	SSR
GGATCGCGATGATGATGAACGGGAGTAACAGATGATTTCTGATGTCTTCGTCGACGGCGGCGGCAGTGGCGGCGATGAATACACGG AAAGGGGACTTGTTCAATCTGAATCCGAACAGCAGCATCGGGAAGAAGAAGCGTGATCGGGCTTCGGTTTCTTACGATCCGAAAAG GAAGCTTCCGGTTCTCCTTTTCGATGTTATGGACACCATCGTCCGTGATCCATTCTACCAAGATATTCCAGCCTTCTTCCGAATGC CGATGAAGGAACTACTCGAGTGCAAGCACCCCACCGCCTGGATCGAATTCGAAAAGGGATTGATCGACGAGGAGGAGCTAGCAAGA AAGTTCTTCATTGATAAGAGGGACTTTGATTTGGAAGGGCTGAAGGATTTCATTAGATCAGGATACTCTTACTTAGATGGAATGCA AGAGCTTCTCCAAACTTTGAGTGCTGACAACTTCGAGATTCATGCTTTCACCAACTACCCCATCTGGTATAAAATGATCGAAGACA AGTTGAAGCTTTCAGCCTACTTGTCATGGACTTTTTGTTCCTGTCATACAGGAAAGAGAAAGCCTGATCCTGAGTTCTATCTCGAG GTTGTGCAACATCTCGGTGTTGAACCTTGCGACTGTGTATTTATTGATGACAGGCCAAGCAACGTCAAGTGTGCAGTAGAGATTGG GATGCGTGGGTTAGTTTTTGAGAATTCAGATTCGCTCCTCAAGGATCTCTCGCATCTAGGGATCAACGTCTCTCTACCCAATATTT GATTGATGTAATTTGTTTAGTAAAAATACACTCGAAAAAAGAACAATACATTTGTTTCGAGAATCCAAGTGGTTATAAAAATAAGT ATCTCTTAGATTAATATAGTATAAAGTAAAGCAACAAGAACATAAAGACTAGGGAGTGGAGAGCACAAGGACATTAAAGAGGGAAG AGGAGGCGAGAAAGATGAAGGAGAGCAAGACTAGGAGGAGGGAGAGAGCGACGTGATTGCAGAAAGAAGAAAGGGTCTTGCAGAAG TCAGGGAGAGGAGTGTGTTTGATGCCGGTTTTGTTGAGGTTTGTTACTCCAATAGCGGCTGATCCAGCGCTCATTATCAAATAGCT GAAGAGCTGATCGAAGATAAAGCAAAGCCAAGCTTGGGAGCGGGAGGGTGTGATGGGTGATCCAGTGAAGAGCCTGTAAATTCCTA GACAGAGGTGGACCAGGGAGTAGAGAATGGTCACCGTGCATGCCCCCACCACATACTGGTAGGAGGGAGAGAAAGACCACTTGGAG TTGAGAGTGAGCGGGAAGCCATAGACGTAAGCTACACCCTCCTCTTTTGCCATCAGCATTACCGCCATAGCAGTGGCTGAAGCAGC CAAGCAGCCTCCTCTGAGGGACACCTGAACCCCCTCCCTCCTCCTCCTCCTTTTTTCCTCTCCATTTCTGTTCATTCGATCTACCT TTTTAACTTTTTTTTTTCTCTGCTTCTACTCTAATCTATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565221 haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	968	3e-102
AAM63745 unknown [Arabidopsis thaliana]	964	7e-102
XP_002887859 hypothetical protein ARALYDRAFT_477291 [Arabidopsis lyrata subsp. lyrata]	962	1e-101
AAF68115 F20B17.21 [Arabidopsis thaliana]	815	1e-084
CBI17665 unnamed protein product [Vitis vinifera]	790	1e-081

Swiss-Prot top hits (Blast detail)	Score	e value
Q1PFB8 UPF0497 membrane protein At1g79780	729	5e-076
Q3EB59 Putative UPF0497 membrane protein At3g16300	421	3e-040
A7P756 UPF0497 membrane protein 14	416	1e-039
B9GGL4 UPF0497 membrane protein 13	415	1e-039
B9GXD6 UPF0497 membrane protein 14	405	2e-038

TrEMBL top hits (Blast detail)	Score	e value
Q84VZ1 At1g79790	968	2e-102
Q8LCB6 Putative uncharacterized protein	964	5e-102
Q9MA00 F20B17.21	815	9e-085
C6T4S6 Putative uncharacterized protein	765	6e-079
C6TGB1 Putative uncharacterized protein	765	6e-079

Arabidopsis top hits (Blast detail)	Score	e value
AT1G79790.1 haloacid dehalogenase-like hydrolase family protein	969	7e-105
AT1G79780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G16300.1); Has 167 Blast hits to 167 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	730	4e-077
AT1G79790.2 haloacid dehalogenase-like hydrolase family protein	421	2e-041
AT3G16300.1 integral membrane family protein	421	2e-041
AT3G55390.1 integral membrane family protein	147	1e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	6			75%


9	2			25%

Unigene Members	Member information