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Information for unigene UN09304
| FASTA Sequence |
| Unigene ID: UN09304 | Length: 935 |
SSR | SNP | CATAATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAAAGATAATTATTTCTCATTTAAACAAAGCTACTCATT
GAGTCATTTCCCCAAGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAGAGATACACATGTGACATGTGCA
ACTTCATTACACCATGAGGCCCTCAGGTGCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTGAGTGGTCA
GCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATCTGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTC
TCATAGGTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTTCTCCACCACAACTTCTCCTTCAATCCCAGC
GTTCTGCGCAATAAGTGCTGCTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCAGCGTCCTCAAACGTCT
CCTTAATGGCAGGGATAACAGTGGAGAGATGCACCAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGGTA
GCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTTTCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACC
AGAGAGTTTGGCTATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACAGTTCCTTCTTCAGCTGGGAGATAC
GAGCTTGCAACTCGTCCTTGGAAGCCGCATCTGCGATCAGCGTAGTCGAGTCTTTGCTTATGGTCACTTTACGTGCAATACCCAAC
TGATCTATGGTTGTGTTTTCCACCAGCAGGCCCATGTCAAGGGCTTGGTACTCAGCTCCTGTCAAGATTGCGATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| P21239 RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor | 1174 | 2e-126 |
| NP_180367 chaperonin-60alpha [Arabidopsis thaliana] | 1162 | 4e-125 |
| AAM63618 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1162 | 4e-125 |
| BAD95121 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1155 | 3e-124 |
| XP_002880957 CPN60A [Arabidopsis lyrata subsp. lyrata] | 1155 | 3e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21239 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1174 | 7e-128 |
| P21238 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1162 | 2e-126 |
| P34794 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1116 | 4e-121 |
| P08926 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1099 | 4e-119 |
| P08823 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1018 | 9e-110 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L5U4 Putative rubisco subunit binding-protein alpha subunit | 1162 | 3e-125 |
| Q56WB8 Putative rubisco subunit binding-protein alpha subunit (Fragment) | 1155 | 2e-124 |
| Q2PEP1 Putative rubisco subunit binding-protein alpha subunit | 1084 | 3e-116 |
| Q2PEP8 Putative rubisco subunit binding-protein alpha subunit (Fragment) | 1084 | 3e-116 |
| Q2PEW7 Putative rubisco subunit binding-protein alpha subunit | 1084 | 3e-116 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G28000.1 CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | 1163 | 1e-127 |
| AT5G18820.1 EMB3007 (embryo defective 3007); ATP binding / protein binding | 751 | 7e-080 |
| AT5G56500.1 ATP binding / protein binding | 598 | 4e-062 |
| AT5G56500.2 ATP binding / protein binding | 598 | 4e-062 |
| AT3G13470.1 chaperonin, putative | 595 | 9e-062 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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