RadishBase

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Information for unigene UN09328

FASTA Sequence

Unigene ID: UN09328	Length: 1192		SNP
GGCACGTAGAGTTCTCTGCAATTGAGGATAGCACCTGTAACAATCTACTCTCCCTTTGAAGGTAACTTTTAATATTGATCGTAAAG CAAACAAAGATGGCCCAAAAGGTGGAAGCACAAGGAGGGAAAGGAGGTATTCAATGGGACGATGGATCCGAACACGATGCCGTAAC CAAGATTCAGGTCGGAGCAGGTGGAATCGGCATTCAATACGTCAAGTTTGATTATGTGAAGAACGGACAAACCGAAGAAGCCCCTC TTCGCGGAGTCAAAGGCCGTAGTATCGCAGCTGATCCGTTTGTTATTAACCATCCAGAGGAGCATCTAGTTTCTGTAGAAGGTTGG TATAACCCTGATGGTTTCATTCAAGGGCTTAAGTTCATATCCAACAAGAAAACCTCTGATGTCACTGGATACGATGACGGTACTCA TTTCACTCTCCAAGTTCAAGACAAGAAGATCATTGGCTTTCATGGGTTTGCCGGAGACTGTGTCAACTCTCTTGGAGCTTACTTTG CTCCGTTGACTTCAACCCCGTTGACCCCTGCCAAGAAGCTGCCGGCACTTGGTGCTGATGCAGGAACTGCATGGGATGATGGTGCT TACGATGGTGTTAAGAAGGTGTACGTAGGACAGGCCGAAGATGGTATATCAGTCGTTAAGTTTGTGTACGACAAAGGCGCTGAGGA CATCGTCGGAGCTGAACATGGAACGAGTACTCTACTCGGATTCGAAGAGTTCGAACTTGACTATCCAAGTGAGTACATCACGGCTG TCCAAGGCACCTACGATAAAATCTTTGGGAGTGATGCAATGGTCATAAATATGCTTAGGTTCAAGACTAATAAGCAAACATCTACT CCATTTGGACTTGAAGCTGGCACAGCCTTTGAGCTAAAAGAGGAAGGCCACAAGATCGTGGGATTCCATGGAAAAGTCAGTGACCT GCTTCATCAGCTTGGAGTCTATGTGATGCCAGTCACCAACTGATCATATGACATCTTTCACTTTGCTTCCATTCCGTGCATCTAAA ATAAGCTATTATATCTATCTTTTAAATTTGTTATGTGAAGTCTCCTCGTGCCTCTGGCGACCTTTGAATAAGTGTTTTAAGTAACG TTTCTTGTAATGTTGTTTTTTCTTTGATGTGTGTGTAATCCATTTCAATAAAGGAAGTTTGTTCCATCTCGGTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002883006 pyk10-binding protein 1 [Arabidopsis lyrata subsp. lyrata]	1333	9e-145
XP_002883007 hypothetical protein ARALYDRAFT_897956 [Arabidopsis lyrata subsp. lyrata]	1327	4e-144
NP_188264 jacalin-related lectin 31 [Arabidopsis thaliana]	1250	4e-135
AAM65935 putative lectin [Arabidopsis thaliana]	1244	2e-134
NP_188263 PYK10-binding protein 1 [Arabidopsis thaliana]	1241	4e-134

Swiss-Prot top hits (Blast detail)	Score	e value
O04316 Nitrile-specifier protein 4	953	4e-102
O04312 Myrosinase-binding protein-like At3g16440	873	8e-093
Q9SAV0 Myrosinase-binding protein-like At1g52040	782	3e-082
O80948 Myrosinase-binding protein-like At2g39330	710	6e-074
O80950 Myrosinase-binding protein-like At2g39310	674	1e-069

TrEMBL top hits (Blast detail)	Score	e value
O04313 Jasmonate inducible protein isolog	1250	2e-135
Q8L9J3 Putative lectin	1244	1e-134
O04314 Jasmonate inducible protein isolog	1241	3e-134
Q8LAM1 Putative lectin	882	1e-092
O04311 AT3G16450 protein	876	6e-092

Arabidopsis top hits (Blast detail)	Score	e value
AT3G16430.1 JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding	1251	1e-137
AT3G16430.2 JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding	1251	1e-137
AT3G16420.1 PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding	1242	1e-136
AT3G16420.2 PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding	1242	1e-136
AT3G16420.3 PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding	1242	1e-136

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	10			42%


12	8			33%


9	2			8%


20	4			17%

Unigene Members	Member information