RadishBase

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Information for unigene UN09403

FASTA Sequence

Unigene ID: UN09403	Length: 1102	SSR	SNP
GGAAAAATCACAATTCACAATGAAGCTCCTTCTTTGTCTCTCTATACTCTTCATCTCTCTTCCATCATCTTACAGCTGCAACTCAA AAGAAGAACATACCCTCCTTCAAATCAAGAAATCTTTCAACAACCCGGACCTCCTCGCCACATGGAGTCCTGGAACCGACTGCTGT ACAAGCTGGACCGGCATCGAGTGCACTAACGGCCGCGTCACATTACTCTGCGTTGATACCACTGCTTACGGCCGGGGCACAATCGT TTCCACTTGAGCGGCACTCGAAATAAGTAGGAAAACTCTTTGCTTTGCGTTGATTTGATTGCTATGGCTCCTTCTCTTCCTCAGCC TTGGGAACTCCGTATGGACGCTAACGGCTACGACATCTATTGGAATCCTGAGACCAAAGTTGCTCAATATGAGCGACCTACTTACC CTCCACCACCTCGCAACTTTGCTCAAGTTGCTTGTACCATCGAGTTTGACGGTGCTTCCAGAGGAAACCCAGGAAAAGCTGGTGCG GGAGCCGTTCTCCGTTCTACACATGATAACAGGGTTCTCTTCTATTTGCGTCAGGGTCTTGGCATTGCCACCAACAACGTTGCTGA GTATCGAGCTCTCATTCTTGGTCTCGAGTATGCTCTTGACAAAGGCTTTCGAAATGTTCGCATCAAGGGAGACTCGTTGCTTGTCT GTAATCAGGTTCTAGATGAATGGAGAGTCAACCACCCGAAATTGGCGGAGCTTAATGAATATGCCAAGGATCTTATGAGCCGGTTT AACTCATGCCGTATTCAACACATTGGCAGGGAATTCAACTCTGAGGCTGATGCTCAAGCTAACCGTGCGGTTAATCTCGCAGATGG TCAAATTCAATGCGAGTCTAGAGGGTGAAACGCAGGAAGAGACTGCAGGCGGCTTTAGAAGAAGGGAGTAATATGCATATTTCTGT TTTCTTGTTTTTGGGATCATGTCTTTTAGCATGTGCTATGTGTTAACATAAACATGAACACGATGATCCTCTCTCTCTCTCTTTTG CTTTGTTCCACTTCCCAATAACATATGTCTCTGTCGTCTACTTGTTATTCTATTCAGTAGTTTTTCATAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAQ62431 At3g01410 [Arabidopsis thaliana]	485	2e-046
NP_186790 RNase H domain-containing protein [Arabidopsis thaliana]	485	2e-046
AAF24611 putative RNase H [Arabidopsis thaliana]	485	2e-046
XP_002312512 predicted protein [Populus trichocarpa]	421	4e-039
XP_002534525 nuclease, putative [Ricinus communis]	421	4e-039

Swiss-Prot top hits (Blast detail)	Score	e value
P64955 Uncharacterized protein Rv2228c/MT2287	246	4e-020
P64956 Uncharacterized protein Mb2253c	246	4e-020
Q9M5J9 Polygalacturonase inhibitor 1	154	2e-009
Q9M5J8 Polygalacturonase inhibitor 2	143	3e-008
A7PW81 Polygalacturonase inhibitor	136	2e-007

TrEMBL top hits (Blast detail)	Score	e value
Q6NQM2 At3g01410	485	1e-046
Q9SGH7 Putative RNase H	485	1e-046
B9HJS3 Predicted protein	421	3e-039
B9T8F6 Nuclease, putative	421	3e-039
B9HVB6 Predicted protein	416	1e-038

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01410.1 RNase H domain-containing protein	486	5e-049
AT3G01410.2 RNase H domain-containing protein	486	5e-049
AT5G51080.1 RNase H domain-containing protein	378	2e-036
AT5G51080.2 RNase H domain-containing protein	378	2e-036
AT5G51080.3 RNase H domain-containing protein	378	2e-036

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	3			20%


6	4			27%


12	2			13%


11	6			40%

Unigene Members	Member information