RadishBase

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Information for unigene UN09441

FASTA Sequence

Unigene ID: UN09441	Length: 1300	SSR	SNP
GGACTAATCATCCTCTTAGAAGAAACCTTCTAACAAAACCAACAACAGCTACATGGATCCTCCCTTCGGCCACTCACACCACCACC ACCATCACCACCACCACCACCAACGCGACGATGACAACGAAGATGATCGTCAATCCTTCGGCGCACCACCGCCGCCACACAACAAC TTCTACGATGCTCCTCCTCCACCCCCTCAGCCTCATTTCGATCCCTACGCGCCTCCTCCGCCAGCACCAGCGCCTTACCGATCGGA GTTCGACCCCTACGCGCCTCCTCCGCCTTACCTCGAAGCTCCGGCACCACCGCCTCCTCAGTTTGGTCACGTGAGCCATGTCGCCC ACCACTCTTCCGAAGAACCAGACCACCACCGTTACGGAGCTTACCCGCCGCATAATTCGTCCCTTGAAAGCTACGGAGACGACGGC ACCGCCGGCGTCGTGCACGTGTCTCACCATAGCTCACATCAGACCGAAAACACGCCTTCTGGTTTCCACCACTTCCATGATGATGA GAACCGTCTTCTTCCTGATAATCTCGCCGGACTCGCCGGAAGACGAACGGTGAAGGTGTATTCTAAAGCAGAGCCTAACTTTTATC TGACGATCAGAGACGGTCAGGTCATTCTCGCCCCAGCCGATCCTTCTGATGAAGCTCAGCACTGGTACAAAGACGAGAAGTACAGT ACTCGTGTGAAGGACGCAGAGGGTCATCCTTGTTTTGCTTTGGTTAACAAGGCCACTGGTGAAGCCATGAAGCATTCTGTGGGAGC TACACAACCCGTTAATCTAGTCAGATATGATCCTGATACGCTTGATGAGTCTGTGCTGTGGACTGAGAGCAAGGATATGGGTGATG GGTATCGGACCATAAGGATGGTAAACAATGTGGGGTTAAACGTTGATGCGTTTCACGGTGACAGCAAATCTGGTGGTGTTCGTGAT GGCACAACTATTGTTCTCTGGGACTGGAACAAAGGAGACAACCAGCTTTGGAAGATCTTTCCTTTCTGAAAATTGGCGGGTGGGAG TGGTAAAAAGTGGTTATGTGTTTAATGAATAATAAATAAACAAAACTGTTGTTGTGGCTGTAAGACTTGAGTTTGTGACATTGTGA TCTGTAATCTATTAAATCACATCTTAGAAGTATGCAATATTACATATGTGGTTTATGTATTTTACAATGTTTTTTTGAGTACTTCT ATAAATATGCTTTTATTATCTGTTTTGAAATCCGTTTTTATTTGGTTGTTGAAAAGATACACACAGATTTTAATTTGAATCATGTT TTGACAATGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34530 unnamed protein product [Thellungiella halophila]	1356	2e-147
XP_002862306 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]	1247	9e-135
NP_565899 hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana]	1236	2e-133
ACU23014 unknown [Glycine max]	831	2e-086
XP_002525466 conserved hypothetical protein [Ricinus communis]	818	5e-085

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FLQ7 Formin-like protein 20	180	2e-012
A3AB67 Formin-like protein 16	144	3e-008
Q84ZL0 Formin-like protein 5	143	4e-008
Q54WH2 Formin-A	141	7e-008
Q9T0K5 Leucine-rich repeat extensin-like protein 3	139	1e-007

TrEMBL top hits (Blast detail)	Score	e value
Q945P1 At2g39050/T7F6.22	1236	1e-133
C6TJC4 Putative uncharacterized protein	831	1e-086
B9SHJ7 Putative uncharacterized protein	818	3e-085
A9PGH1 Putative uncharacterized protein	763	8e-079
C6TNS9 Putative uncharacterized protein	739	5e-076

Arabidopsis top hits (Blast detail)	Score	e value
AT2G39050.1 hydroxyproline-rich glycoprotein family protein	1254	5e-138
AT1G61080.1 proline-rich family protein	150	5e-010
AT4G13340.1 leucine-rich repeat family protein / extensin family protein	149	7e-010
AT1G26240.1 proline-rich extensin-like family protein	140	8e-009
AT3G22800.1 leucine-rich repeat family protein / extensin family protein	137	2e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	3			27%


21	2			18%


20	1			9%


11	2			18%


6	3			27%

Unigene Members	Member information