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Information for unigene UN09463

FASTA Sequence
Unigene ID: UN09463Length: 847 SSRSNP
GTGAACATAGAGCCGAGCTGTAGCTTCTGGTTCTTGAACAATAAAGTGACAAACATTCTCCGGAAAATAACAACAGCATTCAACAA
GATCATAACTTAAATATGTTTTAAGCAAACAGAACTTAACATTAAAAGCTCCAAAATTTCGACAAAGCAACAAAAGGGTCAATTCA
TCTTCTGAATCTCCCACCTCTGCCACCACCGCGGCCACCTCTTCTACCACCACCACCACCACCATGTCCATTACCGTTAGACCCAG
GAGTCTTCATGTTTTCAGGCAAAGGTAGGATGTGATCAACGCACTTCCTGTAGCTGAAATCGTCAGCAGTGTCGTCTTCCCTAACC
AGAAAAAAACACCTGCTTTTCCACATCGGGTGGGTTCTCACTTGGAAGGCTTTGATCCCTCCTCCAATCTTATTGTCAGGCTCAGT
ATGGCCCTTCTTGATCAAATCTAGCAGCACCATGTGCTCATACTTGTTGACATCGAGATCAGTGGGCCAGAAATGCATAAACTTGG
TGAAGTAATCAAACATCGCCACAGAGGTGACGAACTCCTTGGGACCCAGCTTGACCGGATCCGACCCGTTGGGTTTCTCTTCCTCT
CCCACTTTCTGCTTCTTGGATTCGCCTCCTCCATCCTCTGTTTCCTCCGTCGTCTCCTCTCTCCCGCGTTTCTCTGCAGCTTCTTC
GACTTCAGTGTCCGTTATTGGATCTGGTTTCACTTCGGCTGCCGACACTGAATCGAGGATCTCTTGTTGCTCAGCCATTGTTATTA
ACCTTGTGAGAAGCTTTCGCCTTTTCTCTTCTTTCTACGCGGTTGCTAGGGTTTAAGCTTTAGGTCGAGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866491 hypothetical protein ARALYDRAFT_496421 [Arabidopsis lyrata subsp. lyrata]8471e-088
NP_201050 uncharacterized protein [Arabidopsis thaliana]8452e-088
XP_002284935 PREDICTED: hypothetical protein [Vitis vinifera]5494e-054
XP_002514753 conserved hypothetical protein [Ricinus communis]5413e-053
XP_002319542 predicted protein [Populus trichocarpa]5404e-053

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8L557 EMB5148451e-088
B9RLY4 Putative uncharacterized protein5412e-053
B9I7T1 Predicted protein5403e-053
B9MZV4 Predicted protein5342e-052
C6SWI8 Putative uncharacterized protein5242e-051

Arabidopsis top hits (Blast detail)Scoree value
AT5G62440.1 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.8466e-091

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  10%
 
65  50%
 
94  40%

Unigene MembersMember information