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Information for unigene UN09485

FASTA Sequence
Unigene ID: UN09485Length: 1847 SSR 
CCAAAACAACAGCGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAAAGTGAAACTGCTTTCGATCAAAAAAAAAAAGGAAG
GGGGGCAGTAACGCCAAGTCTGCTGGATTTGGATCGAAGCAGAGACTTGCTGTTGATTTATTCATCTCCTTCGTCAAGTTAAAAAA
GGTAACTAAAATTGACCTGAGAGGGAGGGGTTTAGTTTTGAAGCGAAAGGGTTTAGTTTTTTTTTTTTTGAGTTCGATGGGGACAG
GGAATTCTAAGCAGAAATGGAGACAGCGTTCTTCTTCATCATCCTTTAGGTCAACTTCAGCTTCTTCATCTCCATGGGCTTCTCAT
CAAACCTATCCTCAATACGGTTCTGGAAGCTATAACTATCCTCCTCCACCTCCTGAGTACCCCCAACCTCCTTCACCTTCTTCATA
TACTACTACTACTACTACTACTACTACTCAGCCGCCTTACTCTCAAAGTTATGGCAATGATAAGAAGAGGTTGGAGCGCAAGTACT
CCAAATTCTCTGATGATTACTCCTCTTTGGACCAGGTGACAGAGGCTCTTGCTCGTGCGGGTCTAGAATCTTCAAATCTCATTGTC
GGTATTGATTTCACTAAGAGCAATGAGTGGACAGGGGCGAGGTCATTCAATAGGAAAAGCCTACACTTCATAGGCAGTACTACTCC
CAATCCTTACGAGCAAGCCATTGCTATCATAGGAAGAACCTTGGCCGCTTTTGACGAGGACAACTTGATTCCATGTTATGGTTTTG
GAGATGCGTCGACACACGATCAAGACGTGTTTAGTTTCAATCCTGATGATGGGTTCTGTAATGGCTTCGAGGAAGTACTTGGTCGG
TATAAAGAGATTGTCCCTCACCTTAAGCTTGCAGGTCCCACCTCGTTTGCTCCTATCATTGATATGGCGATGACCATTGTTGAGGA
GAGTGGTGGACAGTATCACGTCCTAGTGATTATAGCAGATGGGCAGGTTACAAGAAGCGTTGACACTGAAAATGGACAGCTGAGTC
CACAAGAACTGAAGACTGTGGATGCTATCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTTTTGGTTGGTGTATGGGATGGACCA
TGGGACATGATGAGGGAGTTTGATGATAACATTCCTGCACGAGCTTTTGATAACTTCCAATTCGTGACTTCACAGAGATTATGGCA
AAGACAAGCTCAGTCCTTGAAAGAACAGAGTTTGCTCTCTCTGCTCTCATGGAGATCCTCAACAATACAAAGCTACCTTGGAGCTT
AACCTTTTAGGAAGAAGAAATGGGAATATAACGGAACGGTTTCCTCTTCCACCTCCAGTGCAAGGTGTTGGAGCATCGTCCTACAA
CAAGCCAAAGGCTAATCGTGTTCCAAGTTTCAAACCGAGTGTACCTTCTTATCCAACTGAAAGCTATCATGTAAGGTCTAGTCCTC
CTGCTCCACCCGCTACGACCTCGGCTTCTTCTGATAACCAGATATGTCCTATTTGTCTGAGCAACCCTAAAGACATGGCCTTTGGT
TGTGGTCATCAGACTTGTTGCGAATGTGGACCGGATCTTGAAGTGTGTCCAATTTGCCGTGCACCGATCCAGACAAGAATAAAACT
CTACTAACAAAGTTGATCTCTCTTGTTCATCTTCTTGCAATATATTTTGGGAATTTAGTTTGATATAACTTACTGAGGTTTCTCCG
AGAAAGATCGGATCGGATCTTTCTATAAAAAAAGAAAATATGTGTCAAGTGTGTTCGTTGATTCACTTTGCTTACTTCTTTGGTTT
GAGTAAAAATTGTTGTAATCAATGGCCTTGATTGGTAGAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_196946 E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana]13573e-147
BAH19894 AT5G14420 [Arabidopsis thaliana]13511e-146
XP_002873665 hypothetical protein ARALYDRAFT_488284 [Arabidopsis lyrata subsp. lyrata]13303e-144
XP_002271885 PREDICTED: hypothetical protein [Vitis vinifera]10786e-115
XP_002526974 copine, putative [Ricinus communis]10705e-114

Swiss-Prot top hits (Blast detail)Scoree value
Q9LY87 E3 ubiquitin-protein ligase RGLG213596e-149
Q9SS90 E3 ubiquitin-protein ligase RGLG110693e-115
Q09221 Copine domain-containing protein 23963e-037
Q804S5 E3 ubiquitin-protein ligase mib11401e-007
Q6GNY1 E3 ubiquitin-protein ligase mib11401e-007

TrEMBL top hits (Blast detail)Scoree value
B9DGM7 AT5G14420 protein13519e-147
B9SLV5 Copine, putative10703e-114
Q08ET6 RING-finger protein10623e-113
B9RMT9 Copine, putative10472e-111
B9RAR5 Copine, putative10462e-111

Arabidopsis top hits (Blast detail)Scoree value
AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase13595e-150
AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase13595e-150
AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase13595e-150
AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase13595e-150
AT3G01650.1 RGLG1 (RING domain Ligase1); protein binding / zinc ion binding10692e-116

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  33%
 
122  67%

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