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Information for unigene UN09485
| FASTA Sequence |
| Unigene ID: UN09485 | Length: 1847 |
SSR | | CCAAAACAACAGCGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAAAGTGAAACTGCTTTCGATCAAAAAAAAAAAGGAAG
GGGGGCAGTAACGCCAAGTCTGCTGGATTTGGATCGAAGCAGAGACTTGCTGTTGATTTATTCATCTCCTTCGTCAAGTTAAAAAA
GGTAACTAAAATTGACCTGAGAGGGAGGGGTTTAGTTTTGAAGCGAAAGGGTTTAGTTTTTTTTTTTTTGAGTTCGATGGGGACAG
GGAATTCTAAGCAGAAATGGAGACAGCGTTCTTCTTCATCATCCTTTAGGTCAACTTCAGCTTCTTCATCTCCATGGGCTTCTCAT
CAAACCTATCCTCAATACGGTTCTGGAAGCTATAACTATCCTCCTCCACCTCCTGAGTACCCCCAACCTCCTTCACCTTCTTCATA
TACTACTACTACTACTACTACTACTACTCAGCCGCCTTACTCTCAAAGTTATGGCAATGATAAGAAGAGGTTGGAGCGCAAGTACT
CCAAATTCTCTGATGATTACTCCTCTTTGGACCAGGTGACAGAGGCTCTTGCTCGTGCGGGTCTAGAATCTTCAAATCTCATTGTC
GGTATTGATTTCACTAAGAGCAATGAGTGGACAGGGGCGAGGTCATTCAATAGGAAAAGCCTACACTTCATAGGCAGTACTACTCC
CAATCCTTACGAGCAAGCCATTGCTATCATAGGAAGAACCTTGGCCGCTTTTGACGAGGACAACTTGATTCCATGTTATGGTTTTG
GAGATGCGTCGACACACGATCAAGACGTGTTTAGTTTCAATCCTGATGATGGGTTCTGTAATGGCTTCGAGGAAGTACTTGGTCGG
TATAAAGAGATTGTCCCTCACCTTAAGCTTGCAGGTCCCACCTCGTTTGCTCCTATCATTGATATGGCGATGACCATTGTTGAGGA
GAGTGGTGGACAGTATCACGTCCTAGTGATTATAGCAGATGGGCAGGTTACAAGAAGCGTTGACACTGAAAATGGACAGCTGAGTC
CACAAGAACTGAAGACTGTGGATGCTATCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTTTTGGTTGGTGTATGGGATGGACCA
TGGGACATGATGAGGGAGTTTGATGATAACATTCCTGCACGAGCTTTTGATAACTTCCAATTCGTGACTTCACAGAGATTATGGCA
AAGACAAGCTCAGTCCTTGAAAGAACAGAGTTTGCTCTCTCTGCTCTCATGGAGATCCTCAACAATACAAAGCTACCTTGGAGCTT
AACCTTTTAGGAAGAAGAAATGGGAATATAACGGAACGGTTTCCTCTTCCACCTCCAGTGCAAGGTGTTGGAGCATCGTCCTACAA
CAAGCCAAAGGCTAATCGTGTTCCAAGTTTCAAACCGAGTGTACCTTCTTATCCAACTGAAAGCTATCATGTAAGGTCTAGTCCTC
CTGCTCCACCCGCTACGACCTCGGCTTCTTCTGATAACCAGATATGTCCTATTTGTCTGAGCAACCCTAAAGACATGGCCTTTGGT
TGTGGTCATCAGACTTGTTGCGAATGTGGACCGGATCTTGAAGTGTGTCCAATTTGCCGTGCACCGATCCAGACAAGAATAAAACT
CTACTAACAAAGTTGATCTCTCTTGTTCATCTTCTTGCAATATATTTTGGGAATTTAGTTTGATATAACTTACTGAGGTTTCTCCG
AGAAAGATCGGATCGGATCTTTCTATAAAAAAAGAAAATATGTGTCAAGTGTGTTCGTTGATTCACTTTGCTTACTTCTTTGGTTT
GAGTAAAAATTGTTGTAATCAATGGCCTTGATTGGTAGAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196946 E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana] | 1357 | 3e-147 |
| BAH19894 AT5G14420 [Arabidopsis thaliana] | 1351 | 1e-146 |
| XP_002873665 hypothetical protein ARALYDRAFT_488284 [Arabidopsis lyrata subsp. lyrata] | 1330 | 3e-144 |
| XP_002271885 PREDICTED: hypothetical protein [Vitis vinifera] | 1078 | 6e-115 |
| XP_002526974 copine, putative [Ricinus communis] | 1070 | 5e-114 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LY87 E3 ubiquitin-protein ligase RGLG2 | 1359 | 6e-149 |
| Q9SS90 E3 ubiquitin-protein ligase RGLG1 | 1069 | 3e-115 |
| Q09221 Copine domain-containing protein 2 | 396 | 3e-037 |
| Q804S5 E3 ubiquitin-protein ligase mib1 | 140 | 1e-007 |
| Q6GNY1 E3 ubiquitin-protein ligase mib1 | 140 | 1e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DGM7 AT5G14420 protein | 1351 | 9e-147 |
| B9SLV5 Copine, putative | 1070 | 3e-114 |
| Q08ET6 RING-finger protein | 1062 | 3e-113 |
| B9RMT9 Copine, putative | 1047 | 2e-111 |
| B9RAR5 Copine, putative | 1046 | 2e-111 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase | 1359 | 5e-150 |
| AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase | 1359 | 5e-150 |
| AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase | 1359 | 5e-150 |
| AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase | 1359 | 5e-150 |
| AT3G01650.1 RGLG1 (RING domain Ligase1); protein binding / zinc ion binding | 1069 | 2e-116 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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