 |
Information for unigene UN09510
| FASTA Sequence |
| Unigene ID: UN09510 | Length: 1076 |
SSR | | GGGTTCCGGCCACGCTCGCTCTATATTCTACGTGCGAGTGTCGTCTTCTCTACTCTCTCCTCTCTCTCTCTCTCTCTCGCATTAGA
TCACTCCGTTGACTCTGCTTCCACCCGGAGAAGATCTCTGGTTTCGGAGATTGCAGCTGATTCTCTGTTGAAGCTAACTCGGCAGC
CATGAGCTCAATTTTGCAGGGTTTTACTAAGTCACTCGCCATGACTTTTGTGTCGGAGATTGGCGACAAGACCTTCTTCGCCGCCG
CTATTCTGGCTATGCGTTATCCAAGGAGACTTGTGTTGGCTGGTTGTGTCTCGGCTCTGATTGTCACGACTATCCTCTCTGCTGCC
ATTGGATGGGCTGCTCCTAATCTGATCTCTCGCAAATGGACCCATCACATAACAACCTTGTTGTTCTTTGGTTTCGGGCTATGGTC
TTTGTGGGACGGTTTCACAGAAGGAGGAGGGGATTCTGACGAATTGGCCGAAGTGGAAGCAGAACTGGATTCTGATTTTAAGGCTA
ATGGTAAAACTACAAAAGATAACAGTAAGATTGAAGATGAAAACAAGAAACAGAAAAGGCCATTCCTCACACAATTCTTCTCTCCT
ATTTTTCTCAAGGCGTTTTCGATTAACTTCTTTGGTGAATTTGGTGACAAGAGTCAGCTTGCTACAATTGGTTTAGCCGCTGATGA
AAACCCGTTTGGGGTTGTCCTTGGTGGAATTGTGGCACAGCTTGTGTGTACCACTGCTGCTGTGATTGGAGGAAAGAGCTTAGCGT
CTCAGATATCCGAACGAATAGTTGCTCTTTTTGGTGGAGTGCTTTTCATTATATTTGGCATCCAATCGTTTCTTACTTCTGTTGAG
GCCTAATGCTTCTTTCTGGGGTTGTAGGGAGAGCTGAAGATGACGATGAAGAACTTTGCTATCTATACTTTCTTTTAGATATGTAA
TCTTGATACTAGATGTTTTACGCAAGTCATTACAAAACAATCGGAAAGTTTATTTAACCTTGAAAAAAACATTTAAAGGGGCGCTG
AAGCAGCCATTTGACTTCAATAAAGTTCTGGTAATCTTTGGTTG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_173923 putative transmembrane protein [Arabidopsis thaliana] | 1057 | 7e-113 |
| XP_002893419 hypothetical protein ARALYDRAFT_335795 [Arabidopsis lyrata subsp. lyrata] | 1057 | 7e-113 |
| AAM65603 transmembrane protein, putative [Arabidopsis thaliana] | 1054 | 2e-112 |
| XP_002887196 hypothetical protein ARALYDRAFT_475991 [Arabidopsis lyrata subsp. lyrata] | 1000 | 3e-106 |
| NP_177032 UPF0016 protein 5 [Arabidopsis thaliana] | 990 | 4e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q4V899 Transmembrane protein 165 | 410 | 3e-039 |
| P52875 Transmembrane protein 165 | 407 | 8e-039 |
| Q9HC07 Transmembrane protein 165 | 395 | 2e-037 |
| P38301 UPF0016 membrane protein YBR187W | 188 | 2e-013 |
| Q9P7Q0 UPF0016 membrane protein C186.05c | 176 | 5e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C6M1 Putative transmembrane protein | 1057 | 5e-113 |
| Q8LA33 Transmembrane protein, putative | 1054 | 1e-112 |
| Q9SX28 At1g68650 | 990 | 3e-105 |
| B9ST29 Transmembrane protein TPARL, putative | 957 | 2e-101 |
| B9N257 Predicted membrane protein | 928 | 5e-098 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
