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Information for unigene UN09542
| FASTA Sequence |
| Unigene ID: UN09542 | Length: 812 |
| SNP | TTTTTTTTCCGAACCATATTGTACTATATATTGTCAATTCAATACACGTACATTTCAAGGGAAACTCACTTGCTTTCAGCCTCTTT
GTAAATTAGCAAAGGGAAAATGATCATAAACAAAGACTAAACATAACGAGAGGACAAAGACAGATTCACATATGATTTTCAGCAAT
CGGGATTGGTTTCCTCATCATCAATCGCAGCAGATGCAAGCACAAGCTGAGGGGTAGGAAGTGTGTAAGTGTAGTTCTCGCGTCTG
GCCTTCTTCTTCTCCCTTTGCACTCTAAAAGCTTCCCTCTTTCTTGCTCTGTAACTGTTGGGATTCTCTGGCACAACTTCTCTAGG
GTACACACTAATCTTCTTCCTGTCAGGACCAAACTTCTCGAACTTGACAAGTCCATCGATTAAAGAGAAGATGGTATGATCTTTAC
CAATCCCAACGTTCTTTCCAGCATGGAACTTAGTGCCACGTTGACGAACGATGATGGCCCCTGGTTTAGCGACTTGGTCACCGTAA
ATCTTGACGCCGAGTCTTTGTCCCGGAGAATCACGACCGTTCTTAGTACTCCCAGCTCCTTTCTTGTGCGCGGATTCAATCGTCAA
TGGAATCGGAGCTTGGAGTTTTTCCAAAGGGAGAGTCACAGTGAAGGAGGTTTTAGGGTTTAGAATCAAATCGCCTCTGAGGAAGG
ACGAGGTTGAAGAGAGGGATAAGCCTTTGAATGCTCCGATTAGATTCAAACTCATCGATGTTGCAATCGCCATTGCTAAGAGAAGC
TAGGGTTTTTTTTTTGTGAGGATGAAGAAGATAACTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACQ90306 auxin-repressed protein 1 [Brassica rapa subsp. pekinensis] | 984 | 1e-104 |
| NP_198911 50S ribosomal protein L27 [Arabidopsis thaliana] | 950 | 1e-100 |
| XP_002870663 hypothetical protein ARALYDRAFT_493880 [Arabidopsis lyrata subsp. lyrata] | 945 | 5e-100 |
| AAM62675 50S ribosomal protein L27 [Arabidopsis thaliana] | 938 | 3e-099 |
| XP_002509506 ribosomal protein L27, putative [Ricinus communis] | 699 | 2e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FLN4 50S ribosomal protein L27, chloroplastic | 950 | 5e-102 |
| P30155 50S ribosomal protein L27, chloroplastic | 655 | 9e-068 |
| O65037 50S ribosomal protein L27, chloroplastic | 582 | 3e-059 |
| A6Q4D3 50S ribosomal protein L27 | 313 | 4e-028 |
| Q10ZG7 50S ribosomal protein L27 | 313 | 4e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C4PJS4 Auxin-repressed protein 1 | 984 | 9e-105 |
| Q8LEF5 50S ribosomal protein L27 | 938 | 2e-099 |
| B9RBH2 Ribosomal protein L27, putative | 699 | 1e-071 |
| A5BCW1 Putative uncharacterized protein | 679 | 2e-069 |
| A9PJG1 Putative uncharacterized protein | 655 | 1e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G40950.1 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome | 951 | 4e-103 |
| AT2G16930.2 ribosomal protein L27 family protein | 225 | 6e-019 |
| AT2G16930.1 ribosomal protein L27 family protein | 225 | 6e-019 |
| AT2G16930.3 ribosomal protein L27 family protein | 225 | 6e-019 |
| AT5G15220.1 ribosomal protein L27 family protein | 225 | 6e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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