RadishBase

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Information for unigene UN09564

FASTA Sequence

Unigene ID: UN09564	Length: 1293	SSR
CATTGAAATGATAATTTTAACTTCTAATGTCTGGTTTGTTGCAAGCGAACTACACTACGAGATTGTCGAAACTGATGGAGCTGGAC AAGACCGTTTATCTCTCTCTCTCTCTAGGAGTGCCATGAATTTGAGCGTGAACAGATGCATCGCCGGTGGATCTTTGAGTTGCAGA ATCAATCATGGTGCTGAAAAAAGGTTGGTCCGTGTTGCCAAGCACTGTGAGCTTCAGAGAGGGAGAAGTTTAGGGTCTGATGCTCT CTCTTTAGAGAAGAAAGAGAGCACAAGTGCTAAACTTGCCATGTTTGGTAGTGGTTTAGTAGGAGTGGCAAACTTGGTAACTCTTA GCTCAGCAAAGGCCGCAGACTTGAAATTGGTTGTCTTGGATCAAGCCACTTCCGTTTACATCTTGGCTGAAGGGACGCTGGGAGAT TCGCTTGGAAACTTCTTGTATTCGGCTAACCAACAAGCTAATGAAGCTGTTCAGGATCAGCTCTCAGCTCTCAGTGTAACAAGTTT GGCAGTAATATTTGGTGCTGGACTTGTGACAAGTCTTTCTCCATGTACACTCAGTGTTCTGCCTTTGACCCTTGGTTATATTGGTG CGTTTGGATCTGGCAAAAGCAGAGGTCAGGTTATTGGAGATGCAATTGCTTTCTCACTGGGGTTAGCAACTACCTTAGCACTTCTT GGGATAGTAGCATCTTTTGCCGGAAAAGCATATGGACAAATAGGACAAGGACTACCAGTAGCTGCATCAGGTCTGGCTATTGTAAT GGGTCTCAATCTTCTTGAGGTAATCCAACTCCAGCTTCCATCTTTCTTTGACAACTTTGATCCTCGTGCAGCAGCAGCAAACTTCC CATCTAGTGTACAAGCGTATCTAGCGGGTCTCACATTCGCACTTGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACCCTTCTT GGCTATGTGGCTACTTCCAAGGATCCAGTAATAGGTGGAAGCTTACTATTGACGTATACAACAGGATACGTTGCTCCACTCATCCT GGCTGCTTCTTTCGCGGGAGCTTTACAGAGCTTACTCTCGTTTCGAAAAGTTTCTGCATGGATCAATCCCATAAGTGGTGCTCTTC TGCTTGGAGGAGGTTTGTATACTTTCTTGGATAGGCTTTTCCCTGCTACTACTATGGTCATGTAAATATTTGTTACTAAAAGAATC ACATACTCATTTCTACCCAAAAAAAAACAACAAAGGATGTGTGTATAGTATTTTAAAACATTCATATTGATTAATAATGTAAAAAT CTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001190537 cytochrome c-type biogenesis ccda-like chloroplastic protein [Arabidopsis thaliana]	1546	2e-169
NP_200240 cytochrome c-type biogenesis ccda-like chloroplastic protein [Arabidopsis thaliana]	1543	4e-169
AAK93606 putative cytochrome c biogenesis protein precursor [Arabidopsis thaliana]	1537	2e-168
AAM64755 cytochrome c biogenesis protein precursor [Arabidopsis thaliana]	1533	6e-168
XP_002864324 cytochrome c biogenesis protein family [Arabidopsis lyrata subsp. lyrata]	1521	2e-166

Swiss-Prot top hits (Blast detail)	Score	e value
Q9M5P3 Cytochrome c-type biogenesis ccda-like chloroplastic protein	1543	2e-170
Q2QY07 Cytochrome c-type biogenesis ccda-like chloroplastic protein 2	1141	8e-124
Q2RAR6 Cytochrome c-type biogenesis ccda-like chloroplastic protein 1	1140	1e-123
P51364 Putative cytochrome c-type biogenesis protein dbsD-like	326	2e-029
Q1XDC3 Putative cytochrome c-type biogenesis protein dbsD-like	290	4e-025

TrEMBL top hits (Blast detail)	Score	e value
Q6TGR9 C-type cytochrome biogenesis protein	1497	6e-164
B9SYH7 Thiol:disulfide interchange protein dsbD, putative	1192	1e-128
B9N580 Predicted protein (Fragment)	1166	2e-125
Q8GZD1 Chloroplast biogenesis protein	1148	2e-123
C6TLS2 Putative uncharacterized protein	1145	4e-123

Arabidopsis top hits (Blast detail)	Score	e value
AT5G54290.1 cytochrome c biogenesis protein family	1544	1e-171

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			10%


11	6			60%


20	1			10%


9	2			20%

Unigene Members	Member information