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Information for unigene UN09574

FASTA Sequence
Unigene ID: UN09574Length: 1094  SNP
TTTTTCTTGGTTGGATAATGGCAGCCTCCTCCTCCTGCTTCGCAGTTCCCTTATCTTCTTCTCGATCATCTTCCAATGCCATCCCC
AAATGCCAAACGCTAATCTCTCCGTTCTCTTACGTACCATCTCTGAAAGCTTCTACCACCTCTTTCCATCTCTCTTCTCTTTCTCG
CCAACGACTGCAACTCAAGGTCTTTTCTTCTTCTTCAGAATTATCAGTTCTGGATGAAGCGAAAGTAGAAGAAGAAGAAGTTAAAG
CTGATGGAGAGACAGGAGAAGAAACCGAAGCGGAGCCAGTGGTGACGAAGAAACCGAGACCTTGCGAGCTATACGTTTGTAATATC
CCAAGAAGCTATGACATTACTCAGCTTCTCGACATGTTTCAGTCTTTTGGAACTGTCATCTCCGTCGAGGTATCTCGAAATCCAGA
GACTGGAGAGAGCCGTGGAAGCGGTTATGTCACAATGAGTTCTATCAACTCTGCCAAAAACGCCATTGCTTCTCTTGATGGAAATG
AAGTAGGTGGTCGGGAGATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACTAAGAGAAACACATCAGCCTTGAACTCAACA
CCTAAGAAGATTCTCATGTACGAAAGCCCGTACAAGGTTTATGTCGGAAACCTCCCTTGGCTCACTCAGCCTGATGGTTTGAGAGA
CCACTTTAGCCAGTTTGGTACAGTCGTAAGCACCAGAGTGTTGCACGACCGCAAGACTGGGAAAAACAGAGTCTTTGCCTTTCTTT
CCTTTGCGAACCTTGAAGAACGTGATGCTGCTCTTTCGCTCAATGGAACAGAATATGAAGGTCGCAGAATCATAGTCAGACAAGGT
ATCGAGAGGACCGAGTCTTAAAAACCACCTGCTCCCCTTTTGCTGCGAAAACATTTTCTTCAACAAGTAACCCCTTTTTATTTCGC
TCTGTTTCTTTTTTTTTCTTGAAGTTCCTTGTTACTCTTCAATTGTAACTTTCCATCTACATCTTCTTTTACCAATGAAGTGTAAT
CGTCACTGTCAGTCAATCTCCTCAAGCGTCTAAGTGTAATTCGAAAGGGCCCAAATCATAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_171616 RNA recognition motif-containing protein [Arabidopsis thaliana]10641e-113
NP_001030925 RNA recognition motif-containing protein [Arabidopsis thaliana]9762e-103
XP_002889386 predicted protein [Arabidopsis lyrata subsp. lyrata]9547e-101
XP_002515076 ribonucleoprotein, chloroplast, putative [Ricinus communis]7047e-072
XP_002320231 predicted protein [Populus trichocarpa]6779e-069

Swiss-Prot top hits (Blast detail)Scoree value
P19684 33 kDa ribonucleoprotein, chloroplastic3388e-031
Q08935 29 kDa ribonucleoprotein A, chloroplastic3012e-026
P49313 30 kDa ribonucleoprotein, chloroplastic2715e-023
Q04836 31 kDa ribonucleoprotein, chloroplastic1783e-012
Q03878 Glycine-rich RNA-binding protein1712e-011

TrEMBL top hits (Blast detail)Scoree value
Q8W592 At1g01080/T25K16_710648e-114
Q2V4R5 Putative uncharacterized protein At1g01080.210522e-112
B9RNK5 Ribonucleoprotein, chloroplast, putative7045e-072
B9I948 Predicted protein6776e-069
A2YQN8 Putative uncharacterized protein5002e-048

Arabidopsis top hits (Blast detail)Scoree value
AT1G01080.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative10653e-116
AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative10539e-115
AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding2903e-026
AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative2732e-024
AT3G52150.1 RNA recognition motif (RRM)-containing protein2519e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  20%
 
916  80%

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