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Information for unigene UN09574
| FASTA Sequence |
| Unigene ID: UN09574 | Length: 1094 |
| SNP | TTTTTCTTGGTTGGATAATGGCAGCCTCCTCCTCCTGCTTCGCAGTTCCCTTATCTTCTTCTCGATCATCTTCCAATGCCATCCCC
AAATGCCAAACGCTAATCTCTCCGTTCTCTTACGTACCATCTCTGAAAGCTTCTACCACCTCTTTCCATCTCTCTTCTCTTTCTCG
CCAACGACTGCAACTCAAGGTCTTTTCTTCTTCTTCAGAATTATCAGTTCTGGATGAAGCGAAAGTAGAAGAAGAAGAAGTTAAAG
CTGATGGAGAGACAGGAGAAGAAACCGAAGCGGAGCCAGTGGTGACGAAGAAACCGAGACCTTGCGAGCTATACGTTTGTAATATC
CCAAGAAGCTATGACATTACTCAGCTTCTCGACATGTTTCAGTCTTTTGGAACTGTCATCTCCGTCGAGGTATCTCGAAATCCAGA
GACTGGAGAGAGCCGTGGAAGCGGTTATGTCACAATGAGTTCTATCAACTCTGCCAAAAACGCCATTGCTTCTCTTGATGGAAATG
AAGTAGGTGGTCGGGAGATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACTAAGAGAAACACATCAGCCTTGAACTCAACA
CCTAAGAAGATTCTCATGTACGAAAGCCCGTACAAGGTTTATGTCGGAAACCTCCCTTGGCTCACTCAGCCTGATGGTTTGAGAGA
CCACTTTAGCCAGTTTGGTACAGTCGTAAGCACCAGAGTGTTGCACGACCGCAAGACTGGGAAAAACAGAGTCTTTGCCTTTCTTT
CCTTTGCGAACCTTGAAGAACGTGATGCTGCTCTTTCGCTCAATGGAACAGAATATGAAGGTCGCAGAATCATAGTCAGACAAGGT
ATCGAGAGGACCGAGTCTTAAAAACCACCTGCTCCCCTTTTGCTGCGAAAACATTTTCTTCAACAAGTAACCCCTTTTTATTTCGC
TCTGTTTCTTTTTTTTTCTTGAAGTTCCTTGTTACTCTTCAATTGTAACTTTCCATCTACATCTTCTTTTACCAATGAAGTGTAAT
CGTCACTGTCAGTCAATCTCCTCAAGCGTCTAAGTGTAATTCGAAAGGGCCCAAATCATAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_171616 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1064 | 1e-113 |
| NP_001030925 RNA recognition motif-containing protein [Arabidopsis thaliana] | 976 | 2e-103 |
| XP_002889386 predicted protein [Arabidopsis lyrata subsp. lyrata] | 954 | 7e-101 |
| XP_002515076 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 704 | 7e-072 |
| XP_002320231 predicted protein [Populus trichocarpa] | 677 | 9e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 338 | 8e-031 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 301 | 2e-026 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 271 | 5e-023 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 178 | 3e-012 |
| Q03878 Glycine-rich RNA-binding protein | 171 | 2e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W592 At1g01080/T25K16_7 | 1064 | 8e-114 |
| Q2V4R5 Putative uncharacterized protein At1g01080.2 | 1052 | 2e-112 |
| B9RNK5 Ribonucleoprotein, chloroplast, putative | 704 | 5e-072 |
| B9I948 Predicted protein | 677 | 6e-069 |
| A2YQN8 Putative uncharacterized protein | 500 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G01080.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 1065 | 3e-116 |
| AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 1053 | 9e-115 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 290 | 3e-026 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 273 | 2e-024 |
| AT3G52150.1 RNA recognition motif (RRM)-containing protein | 251 | 9e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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