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Information for unigene UN09576
| FASTA Sequence |
| Unigene ID: UN09576 | Length: 1004 |
| SNP | AGCTGATTCAGTTTTGCCATATAAAGTAGAAAATATATTTACATCTTTTTATTATTAACAAGATATAACTTCTTCTTTTTTTAAGA
CAACTTTTTCTCTACATGCAATCTTGTAGAGACGCAGGCATAGACATCAAACATACACAATCAAACACAAAATCAAAGCAAAACAT
CAAGAAATCACAAATCCGTTTAATCAAACTCGGACCTCGCGGGTTTAAACTTCTTGGTAAGAACCAATGAACACATCGCCGTAGAT
GAGTCCAGCAAGTGCACCACCAACGAGTGGACCCACCCAGTAGATCCAGATTTGTGACAAGTCTCCACTGACAACAGCTGGTCCGA
ACGACCTCGCTGGGTTCATGGAGCCACCGCTGAAAGGACCAGCAGCGAGGATGTTGGCACCAACGATGAAACCGATAGCGATTGGA
GCAATGGTTCCTAGCGATCCCTTCTTTGGATCAGCAGCTGTGGCGTAAACGGTGTAGACCAAAGCAAATGTCACAACGATCTCCAT
CACGATACCTTCCAGTGCTCCTAAACCGGCTCCGACTCCATGGGTCGGTACGCTCTCTCCATTGGTAACAAAGACAAGGAGAAGGC
AAGCAACGATGGATCCAAGACACTGAGCGATCCAGTATAAGAAACCTGTGATCAGTGTTATGTTTCCTCCAACGGCAAGACCGAGA
GTCACGGCAGGGTTAAGGTGCCCACCAGAGATGTTAGCAGCAACCGAAACCCCAACAAACAAGGCAAACGCGTGAGCCACCGCAAT
AGCCACAAGACCAGCTGGGTCCAAGGCGGCATCGGATGTTAGCTTGCCAAAAGCGATAGCTGAGCCAACGCCAGCGAATACAAAGA
TAAAAGTTGCGATAAACTCAGACAAGTAAGCCTTTAGAGATGCAACGCTGAACGAGTCACCCACACTTCCAACTTCGATCTTCACC
ATGTTTTTTTTTACTCCAAGAATTTGGTTGTTAACACTTTTTTCCTGTTATTCTCCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65010 tonoplast intrinsic protein, putative [Brassica oleracea] | 1214 | 4e-131 |
| NP_199556 aquaporin TIP2-3 [Arabidopsis thaliana] | 1187 | 6e-128 |
| BAF01204 membrane channel protein-like [Arabidopsis thaliana] | 1180 | 4e-127 |
| XP_002863344 AtTIP2_3 [Arabidopsis lyrata subsp. lyrata] | 1179 | 5e-127 |
| ABD64981 tonoplast intrinsic protein, putative [Brassica oleracea] | 1178 | 6e-127 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FGL2 Aquaporin TIP2-3 | 1187 | 2e-129 |
| Q41975 Probable aquaporin TIP2-2 | 1166 | 7e-127 |
| P33560 Probable aquaporin TIP-type | 1063 | 6e-115 |
| P21653 Probable aquaporin TIP-type RB7-5A | 1057 | 3e-114 |
| P24422 Probable aquaporin TIP-type RB7-18C | 1049 | 2e-113 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9N6 Tonoplast intrinsic protein, putative | 1214 | 3e-131 |
| Q2A9S7 Tonoplast intrinsic protein, putative | 1178 | 4e-127 |
| Q2A9D7 Tonoplast intrinsic protein, putative | 1145 | 3e-123 |
| B9MUQ2 Aquaporin, MIP family, TIP subfamily | 1065 | 5e-114 |
| P93706 Root specific | 1063 | 9e-114 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47450.1 AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 1188 | 2e-130 |
| AT4G17340.1 TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel | 1166 | 6e-128 |
| AT3G16240.1 DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 957 | 1e-103 |
| AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel | 788 | 4e-084 |
| AT2G36830.1 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel | 783 | 2e-083 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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