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Information for unigene UN09598
| FASTA Sequence |
| Unigene ID: UN09598 | Length: 1289 |
| SNP | GGGCCTCGTAACTTCCTCTAGTCAACGCCAGTTGTGTTTTTTTTTCTTTACAAGTTGGCGACGGTTGAGAGAGCTCAAGTCAGAAA
CGCGTTTGTGTGGAAAAGAAAAAGAGAGGGAGAAGCTGTAGATGTGATTTTGATCAGATTCTCTTTCGAGTCTCTGATCCCTTATC
GCCTTGCCTTCTTCCTCTCTAGATTGGTCATTCGAAAACATGGCGCCGAAATTCGATACGGAGAAGATGCAGGAACGCCAGAACTT
CCGCAACGTCTGGCACACGGATCTCACCCACAGCATCCAGGGCGATACTCCTTATTGCTGCTTTGCGTTGTGGTGTGCCCCTTGTG
CATCATACTTGCTTCGCAAGCGTGCGCTTTACAATGACATGTCAAGGTACACTTGCTGCGCCGGGTACATGCCTTGTAGTGGCAGG
TGTGGAGAAACCAAATGTCCTCAACTCTGTCTTGCCACTGAGGTCTTTTGCTGCTTTGGAACCTCTGTCGCATCCACTCGTTTTCT
TCTGCAAGATGAGTTCCAGATTCAGACAACCCAATGTGACAACTGCATCATTGGATTTATGGTTTGCCTCAGCCAAGTGGCTTGCA
TATTCTCCATAGTTGCATGTATCGTCGGCATTGATGAGCTTTCTGAAGCTTCTCAGTTGCTCTCTTGTTTAGCTGACATGGTTTAC
TGCACGGTTTGCGCGTGTATGCAGACACAACACAAGGTAGAAATGGACAAGAGAGATGGTAAGTTCGGTCCACAGCCAATGGCAGT
GCCTCCCCCTCAGGTAATGTCACGAATTGATCAAGCAACTCCACCCGCAATCGGTTATCCTCCACAAGGCTACCCACCTTCTGGTT
ATCCTCAACACCCACCACAAGGTTATCCACCTTCTGGCTATCCTCAACACCCTCCACAAGGTTATCCACCTTCTGGCTATCCTCAG
AACCCTCCAGCTTATCCTCAGTACCCTCCAGGTCCAGCTTATCCTCCTCAGGCTTACCCAAAGTAATTCCTCTTTGCGTGGTTTTT
CTTCCGACTCGGGAGACTTTTATTTTTTTTTCCTTTAAAACACATTCACATTGTTGGTATATGCCGAGTGACCTCTGATGTTGTTA
TTGCCTGATACATCCCTCTTGGATTGAGTCATTTGACATTTTTCTTTTCATTGTCTTTTGAATTCTTTTATGTGAAATACAGAGTC
CATTACAATTTCACGACTGTTTATAAAGAGATCTTGTGTTGAGGGTGCAATAATATATCTAATAAATTCGATAAATTGTATTGGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_194078 PLAC8 family protein [Arabidopsis thaliana] | 1236 | 2e-133 |
| BAD43261 unnamed protein product [Arabidopsis thaliana] | 1236 | 2e-133 |
| BAD44288 unnamed protein product [Arabidopsis thaliana] | 1235 | 2e-133 |
| XP_002869778 hypothetical protein ARALYDRAFT_492525 [Arabidopsis lyrata subsp. lyrata] | 1233 | 4e-133 |
| BAD43262 unnamed protein product [Arabidopsis thaliana] | 1232 | 5e-133 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P24603 Rhodopsin | 214 | 2e-016 |
| Q17094 Rhodopsin (Fragment) | 214 | 2e-016 |
| O16005 Rhodopsin | 190 | 1e-013 |
| P31356 Rhodopsin | 190 | 1e-013 |
| P05142 Proline-rich protein HaeIII subfamily 1 | 169 | 4e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q681W9 MRNA, , clone: RAFL21-92-I07 | 1236 | 1e-133 |
| Q8W458 MRNA, , clone: RAFL21-79-C21 | 1236 | 1e-133 |
| Q67YE3 MRNA, , clone: RAFL25-03-N20 | 1235 | 2e-133 |
| Q681W8 MRNA, , clone: RAFL21-92-L18 | 1232 | 3e-133 |
| Q8LCK6 Putative uncharacterized protein | 1212 | 7e-131 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G23470.1 hydroxyproline-rich glycoprotein family protein | 1236 | 6e-136 |
| AT4G23470.3 hydroxyproline-rich glycoprotein family protein | 1122 | 1e-122 |
| AT5G41390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 12019 Blast hits to 5816 proteins in 448 species: Archae - 6; Bacteria - 1151; Metazoa - 4980; Fungi - 1500; Plants - 2605; Viruses - 338; Other Eukaryotes - 1439 (source: NCBI BLink). | 1014 | 4e-110 |
| AT1G63830.2 proline-rich family protein | 976 | 9e-106 |
| AT1G63830.1 proline-rich family protein | 976 | 9e-106 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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