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Information for unigene UN09600

FASTA Sequence
Unigene ID: UN09600Length: 889 SSRSNP
GACCCTCAAAAAGACTTCCTTCTAACCTTTGGTTGCCAGTTGATAGAATTTATCAAAACAGATGAACCAAAATTAATATTAAAAAA
AGAGAGAATTGTATGATCCTCTAACAAAAGAAAACTCTTAGATTCCAAAATAAAATAAAAGCCAGAAGAGAAATTACAAAATGTGG
CTAACTCTAGAATCCCACAGTAGAAAAAGAAGCAAAAGTTGTAAGGGAAGAAAAAAACAGAAGGTAGAGCTTTTGAAGACATCAGA
AGCTGTTGTTCTAAAAGCCTCAACACATTTGTGCGGAAGAGACCAGAAGAAGAGCTCTAAGCAGCTTTAGGCTTGGGTATCCTCTT
CTTCAGGTTCCTCTGGGAGGAGGAGGAGGAGGAGGTTGTCGTTGCATTCTTCATTCCGATAAAAAACAGCAATGCCCCAAGAAGCG
CAACGCTCTGCAAGAACTCAGTAAAGAGAAGAGAGAACTCGCGGTCCTGAGGTCCATAGTTGTAGAAATCATATAAGATGGGGCTA
ACGACCACCAAGTAGAAAGCCAGAAGATAGGCACCAAAGACGTTGCCAACAACAAAGAGTAAGCCTCCGAGTCCTTTCAGAGCAAC
AATTGCCCATACGACTTGTTTCACCTCAATGTCGGGAAATGCTACTCCTAATCTGGAAGAGAGATGTGCTTTGGTCAGGTGAAGCT
TTGGAGCCAACTCTTTAGCTGCTGGACCACCGTCAGATCCAAAGTCACTGAACATTTGCCAAGCGGAGAGGATGAATAGAGAAGCG
AAGAGAACTCTTCCGAGAAACGAGAAGAAACCCATTTTTCTCTCCCTCTATCTGTCGCACGTAGGTCTGGTTTGTCGTCGGAGACA
GGAACAATCTTTCTCGGTGGAAGCTATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_171929 HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]6831e-069
XP_002892210 hypothetical protein ARALYDRAFT_887596 [Arabidopsis lyrata subsp. lyrata]6661e-067
ACG24094 nicotiana lesion-inducing like [Zea mays]6401e-064
NP_001147050 nicotiana lesion-inducing like [Zea mays]6302e-063
XP_002862554 hypothetical protein ARALYDRAFT_497403 [Arabidopsis lyrata subsp. lyrata]5925e-059

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O22690 At1g04340/F19P19_236839e-070
B6SGW1 Nicotiana lesion-inducing like6408e-065
B6SK94 Nicotiana lesion-inducing like6301e-063
Q8LBI4 Nicotiana lesion-inducing like5897e-059
Q9LSW5 AT5g43460/MWF20_185691e-056

Arabidopsis top hits (Blast detail)Scoree value
AT1G04340.1 lesion inducing protein-related7095e-075
AT5G43460.1 lesion inducing protein-related6244e-065
AT4G14420.1 lesion inducing protein-related4121e-040
AT3G23190.1 lesion inducing protein-related1299e-008
AT3G23180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT3G23190.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1243e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
117  37%
 
104  21%
 
63  16%
 
125  26%

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