RadishBase

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Information for unigene UN09614

FASTA Sequence

Unigene ID: UN09614	Length: 1223	SSR
TTTTTCTGCAACTTTTTTCTCATGTAGATTTTCTCTATAGAAGACTCAAACTCGCTAATCATAAGTCATTACTCACCGACTCCAAA AATCTGTTCTTTTTTTTTGAACTCAAAACCAGAACCAAATGGCTAGTAACAACAACCCACATGGTAACCTTTCAGACCAAACACCT TCTGATGACTTCTTCGACCAAATCCTCGGTCTTCCCAACTTCTCAGCTTCTTCATCCGACGGTGGGTTAGGCGGAGGAGGAGGAGC ACCGCCGATGATGCTGCAGCTGGGTTCGGGAGAGGAAGGAAGTCACATGGGTGGTGGTGGGTTAGGAGTAGGGAGGAAGTGGACCA ACTGGGTTTCACAATCAGATGTTTCCTCTAGGGTTGAGTCTTGACCAAGGCAAAGGACATGGCTTCCTTAGACCTGAAGGTGGTCA TGGAAGTGTGAATCGTTCTTCTTCTTCTTCTATGAAAGGACCTGTTTTTCATGGGCAGCCGATGCAACAGCCAGCTCCAGCAGCGC CACATCAGCCTACATCGATCCGTCCTAGGGTTCGAGCTAGGCGTGGTCAAGCTACTGATCCACATAGCATCGCTGAAAGGCTACGC AGGGAAAGAATAGCTGAACGGATCAGGGCGCTTCAAGAACTTGTTCCCACTGTTAACAAGACAGATAGAGCTGCTATGATCGATGA GATTGTGGACTATGTTAAGTTTCTCAGGCTCCAAGTTAAGGTTTTGAGCATGAGTCGTCTTGGTGGGGCTGGTGCGGTTGCTCCAC TTGTTACTGATATGCCTTTGTCATCATCAGTTGAGGATGAAACGAGTGATGGTGGAAGGACGCCACAACCTGCGTGGGAGAAATGG TCAAACGATGGGACTGAACGCCAAGTGGCTAAGTTGATGGAAGAAAACGTTGGAGCAGCTATGCAGCTACTTCAATCTAAGGCTCT TTGTATGATGCCTATCTCACTGGCTGTGGCTATTTACCATTCTCAGCCTCCAGATACATCATCAGTGGTTAAACCAGAGACCAATC CTCCTCCACCACAGTAGGGTTTTGTGCAAGTAAGGGTTGTACAGCAACTCAAACGGTCCAACGTGGCTTTACTTTCTACTACTACA CTCATGATGACTCTGGTTTCTTGCTGCTTCATCTCCCTCCATACCACTTGTATGGCGTGGGAGATGGATCATGTAGATTTAAAGTA GAAGGAGTTTGTCAAAGCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002872829 hypothetical protein ARALYDRAFT_490301 [Arabidopsis lyrata subsp. lyrata]	1143	1e-122
BAJ33851 unnamed protein product [Thellungiella halophila]	1142	1e-122
NP_567245 transcription factor UNE12 [Arabidopsis thaliana]	1129	4e-121
NP_001118919 transcription factor UNE12 [Arabidopsis thaliana]	1129	4e-121
AAM65759 putative bHLH transcription factor [Arabidopsis thaliana]	1125	1e-120

Swiss-Prot top hits (Blast detail)	Score	e value
O22768 Transcription factor UNE12	1129	2e-122
Q93Y00 Transcription factor bHLH7	984	1e-105
Q9ZUG9 Transcription factor bHLH66	458	1e-044
Q9LSQ3 Transcription factor bHLH82	447	2e-043
Q8S3D5 Transcription factor bHLH69	329	1e-029

TrEMBL top hits (Blast detail)	Score	e value
B9DFF4 AT4G02590 protein	1129	3e-121
B9S4R9 DNA binding protein, putative	901	8e-095
B9GS74 Predicted protein	879	3e-092
C0JP11 Putative basic helix-loop-helix protein BHLH3	856	1e-089
A5AI09 Putative uncharacterized protein	703	7e-072

Arabidopsis top hits (Blast detail)	Score	e value
AT4G02590.1 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor	1129	2e-123
AT4G02590.2 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor	1129	2e-123
AT4G02590.3 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor	1129	2e-123
AT1G03040.1 basic helix-loop-helix (bHLH) family protein	984	1e-106
AT2G24260.1 basic helix-loop-helix (bHLH) family protein	458	1e-045

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	4			80%


11	1			20%

Unigene Members	Member information