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Information for unigene UN09621
| FASTA Sequence |
| Unigene ID: UN09621 | Length: 1250 |
| SNP | TGTGCCGAATCGAGAACTGCAAGCTGTTTCTTGTTGACAAGAAGATAACAAATGCTAGAGACATTATCAGCATCCTGGAAGATGCG
ATCAAAGGTGGATACCCGCTTCTGATCATCGCTGAAGATAGCGAGCAAGAGCCGTTGGCGACTCTTGTTGTTAATAATCTTCGTGG
TACGATAAAGGTTGCTGCTTTGAAAGCTCCTGGATTTGGAGAGAGGAAGAGTCAGTACCTTGATGACATTGCTGCTCTTACAGGAG
CTACTGTGATTAGAGAAGAAGTTGGACTTCAGTTGGAGAAAGTTGGACCAGAAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACT
AAAGACACTACCACAATTGTTGGTGATGGAAGTACTGAAGAGGTTGTGAAGAAGAGAGTTGAACAGATCAAGAATCTTATCGAGGC
TGCTGAGCAAGACTATGAGAAGGAGAAGCTTAATGAGAGAATCGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGTGCAC
AAACTGAGACAGAGCTTAAGGAGAAGAAACTGAGAGTTGAAGATGCTCTGAATGCTACAAAGGCGGCTGTGGAAGAAGGTATTGTT
GTTGGAGGTGGATGCACTCTGCTAAGACTTGCATCCAAAGTGGACGCGATCAAAGAGACTCTAGCAAATGATGAAGAAAAGGTTGG
AGCTGACATTGTTAAGAAAGCGTTGAGCTACCCTTTGAAGTTAATCGCCAAGAACGCTGGTGTTAATGGTAGCGTTGTCAGCGAAA
AGGTACTCTCTAGCGACAACGCAAAGCACGGCTACAACGCAGCAACAGGCAAATACGAAGATCTAATGGCTGCAGGAATCATTGAT
CCAACCAAAGTTGTGAGATGTTGCTTAGAGCATGCATCATCTGTGGCAAAGACATTCTTGATGTCTGATTGTGTGGTCGTGGAGAT
CAAGGAGCCTGAATCAGCAGCTCCTGCTGGTAACCCTATGGGAAACTCAGGTTATGGTTTTTAAGTTAGCCATCTGTGAGGAAGAA
AATGCCAAGGCCAAGTTCTTTATTTAGTAATCTGAAACGTCTTTTATTTTTTCTGATGTAAAACTTCTTCATTTTCAAAGTCAACA
GTCGCCGGATAGTTCCATTGTGATTCTGATTCATATCTTTAGTTATCTTTTTGGGGTTTGTTCACAATCAGTTTTACAGTTGAAAA
AAAACTAAGAGGAGTATTATTTTGATGTGAACACAACTTTTAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001032083 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 1618 | 8e-178 |
| XP_002864459 ATP binding protein [Arabidopsis lyrata subsp. lyrata] | 1611 | 5e-177 |
| BAF00280 RuBisCO subunit binding-protein beta subunit precursor [Arabidopsis thaliana] | 1610 | 7e-177 |
| BAB11583 RuBisCO subunit binding-protein beta subunit precursor; chaperonin, 60 kDa [Arabidopsis thaliana] | 1599 | 1e-175 |
| XP_002523404 rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] | 1471 | 9e-161 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P08927 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1461 | 6e-161 |
| P21240 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1458 | 1e-160 |
| P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1401 | 5e-154 |
| Q43831 RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) | 1369 | 3e-150 |
| Q42693 RuBisCO large subunit-binding protein subunit beta-1 (Fragment) | 1100 | 4e-119 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z361 AT5G56500 protein | 1618 | 6e-178 |
| Q0WRG9 RuBisCO subunit binding-protein beta subunit | 1610 | 5e-177 |
| Q9FHA9 RuBisCO subunit binding-protein beta subunit; chaperonin, 60 kDa | 1599 | 9e-176 |
| B9SBN5 Rubisco subunit binding-protein beta subunit, rubb, putative | 1471 | 6e-161 |
| B9GXY0 Predicted protein | 1462 | 7e-160 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56500.1 ATP binding / protein binding | 1619 | 2e-180 |
| AT5G56500.2 ATP binding / protein binding | 1619 | 2e-180 |
| AT1G55490.1 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1462 | 4e-162 |
| AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1462 | 4e-162 |
| AT3G13470.1 chaperonin, putative | 1448 | 2e-160 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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