 |
Information for unigene UN09631
| FASTA Sequence |
| Unigene ID: UN09631 | Length: 1871 |
| SNP | GGAAACCGGCGATAGATTTTCTGAGAAGCAGGACACATATCTTGAAACACATGGCAGCGATTTCTCCATGGCTTTCTTCTCCACAG
AGCTTCTCGAGTCCCCGCGTTTCCACTCGATATAGTTCAGCAAGATGCACATCACTTCCTGCTCTCGTCAGTTCCAATGAGGAACA
GCATCAGATACTGTCAAGAGATGAGGTTGGGATGAAGAGAAGGGAAGTCATGTTAAACATAGCTTCTTCCTCTGCTTTCTTACTTC
CACCTGCATTTGCAGAGACAAATTCATCGGAGGCTTTCCGTGTGTACACAGATGAAGCTAACAAGTTCGAGATATCAATTCCACAA
GAGTGGCAAGTCGGACAAGCAGCAGAACCTAACGGGTTCAAGTCAATCACAGCTTTTTACCCTGAAGAAACTTCATCTTACAATGT
GAGCGTAGCGATCACTGGACTAGGTCCAGATTTCACTAGGATGGAATCTTTTGGAAAGGTCGAAGCTTTTGCAGAAACACTTGTCA
GTGGATTGGATAGAAGCTGGCAGAAACCAGCAGGAGTTACTGCAAAGCTAGTCGATAGCAGATCTTCCAAAGGGTTCTATTACATT
GAGTATACATTACAAAACCCTGGAGAAGCTCGTAAGCATTTGTACTCTGCCATTGGGATGGCAACTAACGGTTGGTACAACCGTTT
ATACACCGTCACAGGACAATTTAATGACGAAGAATCTGCTGATCAAAGCTCCAAGATCCAGAAGGCAGTCAAGTCTTTCAAATTCA
TCTGAGAATGTCATTCATATCAATCACCGAAACCATATTGATCAAACATTTTGTTTACTGAACAATCACTTTTTTCAATCAAATTC
TGAGATTTAAAAAAAAAACTAACTCCATACTTTGAAGTAAGCTTTGGATAACAATCATTCATCAGTGTGTTCAGACAAGGAAGAAG
AGACAAACCCTACACAACTAAAGGATATAAACATGCTTTTACTTACAATGCAGGACTTGGAACAGAGGCTATATACCTATGAATGT
TTACTCACTACACTCCTGTACCTGAAGAAAGTGTAGTGGTATTACGACTTTAGACTAAAAGAAAAAAAAAAGAATCAGATTTTGAT
TCTAGTATTATGTATATGCTTGTGTATGTGTGTCTACTATATATAGTACACCAACTTATTACCAACGGTTACCCCTCCTCGGGGAA
AACCGTTACCATGACTGCAAACTCAACCCCCAGCTTGAGCCGGCAGCATCTTTTGTGTCTGTGTTTTAGATAAATACACATTGACG
GATGAGTAAGAAAAACGGAAGCACAAACCCTGAGACTCCCATTTTCCTTCTGTGCCCTTCCAGTGAGCAAAGACTATTTTTTATAT
AACCTTTCAGATGCAAGATAAATAACTTGACGACTTAAAAAATAAACAGGAAGCCTTCTGCTGCCACATTGAATTAGCAATTTCGC
TGCTCCTTTCTCCTCAGTCTTTCAAGGATAACTTGTTGTTTGGTCAGAACTGCTACTCTGCATAAACTGAGGGGGATGAACAATGA
TATGGGACTGTGCTGGAGCAGGGCCTGGAGGGTATGGAACTTGAAGAGCAGGAGGCATGGATGAAGTAGCCATCGCACTAACAGTT
GGTCCTCCACCAAGTTGTAGAACATGGCTTCCTGGAACCGAGTACCCTTGAACTGCTGTATAGCTCTGGCCACCTGGAACAGTCTG
ACTTAATTGCCCGTATTGATAAACTGGTGTGTTAACTGCTCCTCCAGGTACTCCGTAGACCTGAAGGTATTACTGACCCATGTATG
GAGGACCATATAACCCCTGTGACTGTGAGTGCATGTACTCAGGTCCATATGCAGCCACCCCATAC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565131 PsbP domain-containing protein 3 [Arabidopsis thaliana] | 1029 | 3e-109 |
| AAM61552 thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana] | 1026 | 6e-109 |
| XP_002887641 hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] | 950 | 4e-100 |
| XP_002510727 conserved hypothetical protein [Ricinus communis] | 732 | 8e-075 |
| XP_002273332 PREDICTED: hypothetical protein [Vitis vinifera] | 679 | 1e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9S720 PsbP domain-containing protein 3, chloroplastic | 1029 | 1e-110 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9R8T4 Putative uncharacterized protein | 732 | 5e-075 |
| A5AT54 Putative uncharacterized protein | 657 | 3e-066 |
| C6TLW4 Putative uncharacterized protein | 653 | 8e-066 |
| B2ZAQ2 Putative uncharacterized protein | 648 | 3e-065 |
| B9H5W3 Predicted protein (Fragment) | 642 | 1e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G76450.1 oxygen-evolving complex-related | 1030 | 8e-112 |
| AT1G76460.1 RNA recognition motif (RRM)-containing protein | 519 | 1e-052 |
| AT1G20880.1 RNA recognition motif (RRM)-containing protein | 307 | 5e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
